JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC2A7_chr1_8997973_9031423	0/0	c0014	1539	1	0	0	1	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0015	1539	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0016	1539	1	0	1	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0017	1539	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0018	1539	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0019	1539	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0020	1539	1	0	0	0	0	1	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0021	1539	1	0	1	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0022	1539	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0023	1539	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0024	1539	1	0	0	1	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0025	1539	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A8_chr9_127392169_127412898	1/0	c0001	1434	302	74	55	120	13	39	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	c0002	1434	48	0	4	43	0	1	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/1	c0003	1434	24	0	14	2	3	4	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	c0004	1434	15	0	0	15	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	c0005	1434	11	11	0	0	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	c0006	1434	7	1	3	0	2	1	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	c0007	1434	2	0	0	0	0	2	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	c0008	1434	1	0	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	c0009	1434	1	0	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	c0010	1434	1	1	0	0	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	c0011	1434	1	1	0	0	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	c0012	1434	1	1	0	0	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	c0013	1434	1	1	0	0	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	c0014	1434	1	0	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	c0015	1434	1	0	0	0	0	1	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	c0016	1434	1	0	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A9_chr4_9821224_10026497	0/0	c0001	1623	43	17	7	12	5	2	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0002	1623	41	7	4	25	1	4	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0003	1623	39	0	7	27	0	5	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0004	1623	29	0	7	20	0	2	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0005	1623	28	1	0	26	0	1	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0006	1623	26	13	5	1	2	5	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0007	1623	24	4	7	9	2	2	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0008	1623	20	19	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0009	1623	12	0	0	12	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0010	1623	11	0	2	6	2	1	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0011	1623	6	0	3	0	1	2	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0012	1623	6	0	0	0	0	6	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0013	1623	5	4	0	0	0	1	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0014	1623	3	2	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0015	1623	3	3	0	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0016	1623	3	3	0	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0017	1623	3	1	0	2	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0018	1623	3	0	2	0	1	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0019	1623	2	2	0	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0020	1623	2	0	0	0	0	2	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0021	1623	2	0	2	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0022	1623	2	0	2	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497