JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC2A9_chr4_9821224_10026497	0/1	c0023	1623	2	0	0	1	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0024	1623	2	0	0	2	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0025	1623	2	2	0	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0026	1623	1	0	0	0	0	1	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0027	1623	1	0	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0028	1623	1	0	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0029	1623	1	0	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0030	1623	1	0	0	1	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0031	1623	1	0	0	1	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0032	1623	1	0	0	1	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0033	1623	1	1	0	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0034	1623	1	0	0	1	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0035	1623	1	1	0	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0036	1623	1	0	0	1	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0037	1623	1	1	0	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0038	1623	1	0	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0039	1623	1	1	0	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	1/0	c0040	1623	1	0	0	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0041	1623	1	0	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	c0042	1623	1	0	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC30A10_chr1_219905445_219933557	1/1	c0001	1458	422	93	78	190	14	45	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	c0002	1458	1	1	0	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	c0003	1445	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	c0004	1458	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	c0005	1458	1	0	0	0	0	1	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A1_chr1_211566568_211584161	1/0	c0001	1524	430	86	70	215	16	42	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	c0002	1524	2	0	0	0	0	2	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	c0003	1524	1	1	0	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/1	c0004	1524	1	0	0	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	c0005	1524	1	1	0	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	c0006	1524	1	0	0	1	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A2_chr1_26032252_26051118	0/0	c0001	1119	301	78	57	120	12	34	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	c0002	1119	55	20	7	28	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	c0003	1119	1	0	1	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	c0004	1119	1	0	1	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	c0005	1119	1	1	0	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	c0006	1119	1	1	0	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A3_chr2_27248684_27268047	1/1	c0001	1167	261	44	60	110	16	29	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	c0002	1167	40	34	6	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	c0003	1167	10	6	4	0	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	c0004	1167	3	0	0	2	0	1	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	c0005	1167	1	0	0	1	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	c0006	1167	1	0	0	0	0	1	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	c0007	1167	1	0	0	0	0	1	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	c0008	1167	1	0	0	1	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	c0009	1167	1	0	0	0	0	1	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	c0010	1167	1	0	0	0	0	1	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A4_chr15_45474606_45527755	0/1	c0001	1290	202	50	35	89	2	25	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	1/0	c0002	1290	59	7	18	28	2	3	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	c0003	1290	36	29	5	2	0	0	copy fasta	SLC30A4	chr15	45474606	45527755