JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC34A2_chr4_25650851_25683748	0/0	c0009	2073	2	0	0	2	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0010	2073	2	1	1	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0011	2073	2	1	1	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0012	2073	2	0	2	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0013	2073	1	0	0	0	0	1	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0014	2073	1	0	0	1	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0015	2073	1	0	1	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0016	2073	1	0	1	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0017	2073	1	0	0	1	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0018	2073	1	0	0	1	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0019	2073	1	0	0	1	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0020	2073	1	1	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A3_chr9_137225901_137241555	0/0	c0001	1800	189	31	45	85	9	19	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/1	c0002	1800	103	31	17	43	3	8	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0003	1800	42	0	4	31	2	5	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0004	1800	14	0	0	8	1	5	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	1/0	c0005	1800	9	1	4	0	0	3	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0006	1800	7	6	1	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0007	1800	6	6	0	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0008	1800	5	2	0	3	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0009	1800	4	4	0	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0010	1800	4	4	0	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0011	1800	3	0	3	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0012	1800	3	0	0	0	1	2	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0013	1800	3	0	1	0	1	1	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0014	1800	3	3	0	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0015	1800	2	0	0	0	0	2	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0016	1800	2	1	1	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0017	1800	2	2	0	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0018	1901	2	0	0	2	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0019	1800	1	0	0	1	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0020	1779	1	0	0	1	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0021	1800	1	0	0	0	0	1	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0022	1800	1	1	0	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0023	1800	1	0	1	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0024	1800	1	0	0	0	1	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0025	1800	1	0	1	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0026	1789	1	0	0	1	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0027	1800	1	0	0	1	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0028	1800	1	0	0	1	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0029	1800	1	0	0	1	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0030	1800	1	0	1	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0031	1800	1	0	0	1	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0032	1800	1	0	0	1	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0033	1800	1	0	1	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0034	1800	1	1	0	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	c0035	1800	1	1	0	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC35A1_chr6_87467974_87517336	1/1	c0001	1014	395	87	78	174	14	40	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A1_chr6_87467974_87517336	0/0	c0002	1014	2	2	0	0	0	0	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A1_chr6_87467974_87517336	0/0	c0003	1014	1	1	0	0	0	0	copy fasta	SLC35A1	chr6	87467974	87517336