JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC35A2_chrX_48898183_48916646	1/1	c0001	1191	288	76	56	120	11	23	copy fasta	SLC35A2	chrX	48898183	48916646
SLC35A2_chrX_48898183_48916646	0/0	c0002	1191	3	0	0	3	0	0	copy fasta	SLC35A2	chrX	48898183	48916646
SLC35A2_chrX_48898183_48916646	0/0	c0003	1191	1	0	0	0	0	1	copy fasta	SLC35A2	chrX	48898183	48916646
SLC35A2_chrX_48898183_48916646	0/0	c0004	1191	1	0	0	1	0	0	copy fasta	SLC35A2	chrX	48898183	48916646
SLC35A2_chrX_48898183_48916646	0/0	c0005	1190	1	0	0	1	0	0	copy fasta	SLC35A2	chrX	48898183	48916646
SLC35A2_chrX_48898183_48916646	0/0	c0006	1192	1	0	0	1	0	0	copy fasta	SLC35A2	chrX	48898183	48916646
SLC35A3_chr1_99964996_100040634	1/1	c0001	978	119	37	21	45	2	12	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	c0002	978	67	36	6	17	2	6	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	c0003	978	5	4	1	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A3_chr1_99964996_100040634	0/0	c0004	978	1	1	0	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A4_chr5_140559828_140574100	1/1	c0001	975	395	89	67	184	18	35	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	c0002	975	6	5	1	0	0	0	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	c0003	975	4	4	0	0	0	0	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	c0004	975	1	0	0	0	0	1	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	c0005	975	1	0	0	1	0	0	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	c0006	975	1	0	0	1	0	0	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A5_chr3_112557045_112590579	1/1	c0001	1275	225	28	47	108	12	28	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	c0002	1275	88	41	8	37	0	2	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	c0003	1275	35	7	10	12	1	5	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	c0004	1275	9	8	1	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	c0005	1275	4	3	1	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	c0006	1275	2	2	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	c0007	1275	2	0	0	1	1	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	c0008	1275	2	2	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	c0009	1275	1	1	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	c0010	1275	1	1	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	c0011	1275	1	0	1	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	c0012	1275	1	1	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	c0013	1275	1	0	0	0	0	1	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35B1_chr17_49695943_49712964	1/1	c0001	969	402	91	77	184	12	36	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B1_chr17_49695943_49712964	0/0	c0002	969	10	6	3	0	0	1	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B1_chr17_49695943_49712964	0/0	c0003	969	4	0	0	4	0	0	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B1_chr17_49695943_49712964	0/0	c0004	969	1	1	0	0	0	0	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B1_chr17_49695943_49712964	0/0	c0005	969	1	0	0	0	0	1	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B2_chr6_44249101_44262528	1/1	c0001	1299	306	90	64	105	13	32	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	0/0	c0002	1299	108	0	12	79	3	14	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	0/0	c0003	1299	12	0	1	11	0	0	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	0/0	c0004	1299	6	5	1	0	0	0	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	0/0	c0005	1299	1	1	0	0	0	0	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	0/0	c0006	1299	1	0	0	1	0	0	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B3_chr6_8406435_8440545	1/1	c0001	1110	271	22	53	151	10	33	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	c0002	1110	134	66	19	33	4	12	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	c0003	1110	4	4	0	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	c0004	1110	2	2	0	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	c0005	1110	1	0	0	0	0	1	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B4_chr7_134284332_134321930	0/0	c0001	996	179	26	26	100	10	17	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	c0002	996	106	27	23	34	6	16	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	c0003	996	54	29	3	21	0	1	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	c0004	996	1	1	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	c0005	996	1	1	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930