JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC35B4_chr7_134284332_134321930	0/0	c0006	996	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35C1_chr11_45800149_45818016	1/1	c0001	1095	383	71	66	188	13	43	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	c0002	1095	38	22	9	1	4	2	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	c0003	1095	3	3	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	c0004	1095	1	0	0	1	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	c0005	1095	1	0	1	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	c0006	1095	1	0	0	0	0	1	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	c0007	1095	1	0	0	0	1	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C2_chr20_46340984_46369425	1/1	c0001	1098	390	90	70	165	14	49	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	c0002	1098	3	0	0	3	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	c0003	1098	1	0	1	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	c0004	1098	1	0	0	0	0	1	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	c0005	1098	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	c0006	1098	1	0	1	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	c0007	1098	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35D1_chr1_66994350_67059148	1/1	c0001	1068	269	69	48	115	11	24	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	c0002	1068	37	26	8	0	1	2	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	c0003	1068	1	0	0	1	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	c0004	1068	1	1	0	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	c0005	1068	1	0	1	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	c0006	1068	1	0	1	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D2_chr9_96315710_96388711	1/1	c0001	1014	267	65	49	112	13	26	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D2_chr9_96315710_96388711	0/0	c0002	1014	8	7	1	0	0	0	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D2_chr9_96315710_96388711	0/0	c0003	1014	3	3	0	0	0	0	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D2_chr9_96315710_96388711	0/0	c0004	1014	1	1	0	0	0	0	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D2_chr9_96315710_96388711	0/0	c0005	1014	1	1	0	0	0	0	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D2_chr9_96315710_96388711	0/0	c0006	1014	1	1	0	0	0	0	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D2_chr9_96315710_96388711	0/0	c0007	1014	1	0	0	0	1	0	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D2_chr9_96315710_96388711	0/0	c0008	1014	1	1	0	0	0	0	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D2_chr9_96315710_96388711	0/0	c0009	1014	1	1	0	0	0	0	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D3_chr6_136917301_136930660	1/1	c0001	1251	414	74	82	199	15	42	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	c0002	1251	21	21	0	0	0	0	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	c0003	1251	2	0	0	0	0	2	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	c0004	1251	2	0	2	0	0	0	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	c0005	1251	1	0	0	1	0	0	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	c0006	1251	1	1	0	0	0	0	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	c0007	1251	1	1	0	0	0	0	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	c0008	1251	1	1	0	0	0	0	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	c0009	1251	1	0	0	0	1	0	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35E1_chr19_16544837_16577415	1/0	c0001	1233	232	89	39	78	4	21	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/1	c0002	1233	113	1	26	62	5	18	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E1_chr19_16544837_16577415	0/0	c0003	1233	5	0	3	0	1	1	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E2B_chr1_1656478_1697795	0/0	c0001	1218	117	43	20	36	5	13	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0002	1218	69	19	9	31	2	8	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	1/1	c0003	1218	67	2	3	50	2	8	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0004	1218	58	4	16	22	3	13	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0005	1218	10	9	1	0	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0006	1218	9	0	0	9	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0007	1218	3	0	0	3	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0008	1218	3	3	0	0	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795