JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC35E2B_chr1_1656478_1697795	0/0	c0009	1218	2	1	1	0	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0010	1218	1	0	1	0	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0011	1218	1	0	0	1	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0012	1218	1	0	0	1	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0013	1218	1	0	0	1	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0014	1218	1	0	0	1	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0015	1218	1	1	0	0	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0016	1218	1	1	0	0	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0017	1218	1	0	1	0	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0018	1218	1	1	0	0	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	c0019	1218	1	0	0	1	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E3_chr12_68741176_68786468	1/1	c0001	942	429	89	72	203	17	46	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	c0002	942	2	0	0	0	1	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	c0003	942	2	0	0	2	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	c0004	942	1	0	0	0	0	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	c0005	942	1	1	0	0	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	c0006	942	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E4_chr22_30630781_30652893	0/0	c0001	1053	218	51	50	93	10	14	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	1/0	c0002	1053	165	8	24	99	6	27	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	c0003	1053	32	28	3	0	0	1	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	c0004	1053	2	0	0	0	0	2	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/1	c0005	1053	2	0	0	1	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	c0006	1053	2	2	0	0	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	c0007	1053	1	0	0	1	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	c0008	1053	1	0	1	0	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	c0009	1053	1	1	0	0	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35F1_chr6_117902264_118322671	0/0	c0001	1227	179	72	32	47	4	24	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	c0002	1227	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	c0003	1227	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	c0004	1227	1	0	0	1	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F2_chr11_107785991_107863787	1/1	c0001	1125	328	72	62	146	10	36	copy fasta	SLC35F2	chr11	107785991	107863787
SLC35F2_chr11_107785991_107863787	0/0	c0002	1125	6	6	0	0	0	0	copy fasta	SLC35F2	chr11	107785991	107863787
SLC35F2_chr11_107785991_107863787	0/0	c0003	1125	3	0	0	3	0	0	copy fasta	SLC35F2	chr11	107785991	107863787
SLC35F2_chr11_107785991_107863787	0/0	c0004	1125	2	2	0	0	0	0	copy fasta	SLC35F2	chr11	107785991	107863787
SLC35F2_chr11_107785991_107863787	0/0	c0005	1125	2	0	0	2	0	0	copy fasta	SLC35F2	chr11	107785991	107863787
SLC35F2_chr11_107785991_107863787	0/0	c0006	1125	1	0	0	1	0	0	copy fasta	SLC35F2	chr11	107785991	107863787
SLC35F3_chr1_233899676_234329511	0/0	c0001	1473	85	37	27	12	2	7	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F3_chr1_233899676_234329511	0/0	c0002	1473	59	28	10	9	1	11	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F3_chr1_233899676_234329511	0/0	c0003	1473	8	0	3	3	0	2	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F3_chr1_233899676_234329511	0/0	c0004	1473	3	3	0	0	0	0	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F3_chr1_233899676_234329511	0/0	c0005	1473	2	0	2	0	0	0	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F3_chr1_233899676_234329511	0/0	c0006	1473	1	0	0	0	1	0	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F4_chr14_57558920_57871092	0/0	c0001	1458	210	77	36	66	10	21	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F4_chr14_57558920_57871092	0/0	c0002	1458	3	0	2	0	0	1	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F4_chr14_57558920_57871092	0/0	c0003	1458	3	3	0	0	0	0	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F4_chr14_57558920_57871092	0/0	c0004	1458	1	0	0	1	0	0	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F4_chr14_57558920_57871092	0/0	c0005	1458	1	0	0	1	0	0	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F5_chr2_113701709_113761642	1/1	c0001	1572	333	86	52	136	12	45	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	c0002	1572	2	1	1	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	c0003	1572	2	0	2	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642