JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC35F5_chr2_113701709_113761642	0/0	c0004	1572	1	0	0	0	0	1	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	c0005	1572	1	0	0	1	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	c0006	1572	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	c0007	1572	1	0	0	1	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	c0008	1572	1	0	1	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	c0009	1572	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	c0010	1572	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F6_chr2_26759284_26786231	1/1	c0001	1116	297	85	65	92	14	39	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	c0002	1116	2	2	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	c0003	1116	1	1	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	c0004	1116	1	0	1	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	c0005	1116	1	0	0	0	0	1	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35G1_chr10_93888978_93908824	1/1	c0001	1098	310	92	55	110	14	37	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	c0002	1098	2	0	0	1	0	1	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	c0003	1098	1	0	1	0	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	c0004	1098	1	0	0	1	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	c0005	1098	1	0	0	1	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	c0006	1098	1	0	0	1	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G2_chr3_136814126_136860888	0/1	c0001	1239	193	42	42	84	7	17	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	1/0	c0002	1239	86	27	16	30	5	7	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	c0003	1239	21	0	8	0	1	12	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	c0004	1239	6	5	1	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	c0005	1239	4	0	2	0	1	1	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	c0006	1239	2	2	0	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	c0007	1239	2	2	0	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	c0008	1239	1	0	1	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	c0009	1239	1	1	0	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	c0010	1239	1	0	0	0	0	1	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	c0011	1239	1	1	0	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G3_chr17_35187520_35199393	1/1	c0001	1017	363	57	78	170	11	45	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	c0002	1017	68	24	3	37	1	3	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	c0003	1017	14	4	0	10	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	c0004	1017	11	0	0	11	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	c0005	1017	7	6	0	0	0	1	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	c0006	1017	5	4	1	0	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	c0007	1017	3	3	0	0	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	c0008	1017	2	0	0	2	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	c0009	1017	1	0	0	1	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	c0010	1017	1	0	0	1	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	c0011	1017	1	0	0	0	0	1	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	c0012	1017	1	0	0	1	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	c0013	1017	1	0	0	1	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G4_chr18_11604596_11615612	0/1	c0001	1017	155	24	37	67	8	18	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0002	1017	73	3	14	45	3	8	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0003	1017	71	17	5	38	4	7	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	1/0	c0004	1017	48	4	6	29	1	7	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0005	1017	18	0	8	10	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0006	1017	14	7	0	7	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0007	1017	12	5	0	6	0	1	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0008	1017	9	6	3	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612