JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP5MGL_chr22_42634803_42645601	0/0	c0004	303	1	1	0	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	c0005	303	1	0	0	0	0	1	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MG_chr11_118396606_118414847	1/1	c0001	312	334	86	38	158	14	36	copy fasta	ATP5MG	chr11	118396606	118414847
ATP5MG_chr11_118396606_118414847	0/0	c0002	312	1	0	0	0	0	1	copy fasta	ATP5MG	chr11	118396606	118414847
ATP5MG_chr11_118396606_118414847	0/0	c0003	312	1	0	0	0	0	1	copy fasta	ATP5MG	chr11	118396606	118414847
ATP5MJ_chr14_103907288_103926529	1/1	c0001	177	377	51	74	192	16	42	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	c0002	177	57	37	9	9	0	2	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	c0003	177	5	4	1	0	0	0	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	c0004	177	1	0	0	1	0	0	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MK_chr10_103384050_103401475	1/1	c0001	177	438	92	78	212	18	36	copy fasta	ATP5MK	chr10	103384050	103401475
ATP5PB_chr1_111444464_111467773	1/1	c0001	771	409	82	61	207	14	43	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	c0002	771	12	12	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	c0003	771	4	0	0	4	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	c0004	771	3	3	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	c0005	771	2	0	2	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	c0006	771	1	0	0	1	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	c0007	771	1	0	0	0	0	1	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	c0008	771	1	0	1	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	c0009	771	1	1	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PD_chr17_75033863_75051969	1/1	c0001	486	416	89	79	182	16	48	copy fasta	ATP5PD	chr17	75033863	75051969
ATP5PD_chr17_75033863_75051969	0/0	c0002	486	12	11	1	0	0	0	copy fasta	ATP5PD	chr17	75033863	75051969
ATP5PF_chr21_25719500_25739904	1/1	c0001	327	414	93	69	194	16	40	copy fasta	ATP5PF	chr21	25719500	25739904
ATP5PF_chr21_25719500_25739904	0/0	c0002	327	2	1	1	0	0	0	copy fasta	ATP5PF	chr21	25719500	25739904
ATP5PO_chr21_33898453_33920804	0/1	c0001	642	278	60	34	146	10	27	copy fasta	ATP5PO	chr21	33898453	33920804
ATP5PO_chr21_33898453_33920804	1/0	c0002	642	135	27	37	55	7	8	copy fasta	ATP5PO	chr21	33898453	33920804
ATP5PO_chr21_33898453_33920804	0/0	c0003	642	15	8	3	1	0	3	copy fasta	ATP5PO	chr21	33898453	33920804
ATP5PO_chr21_33898453_33920804	0/0	c0004	642	3	0	1	0	1	1	copy fasta	ATP5PO	chr21	33898453	33920804
ATP5PO_chr21_33898453_33920804	0/0	c0005	642	1	0	1	0	0	0	copy fasta	ATP5PO	chr21	33898453	33920804
ATP5PO_chr21_33898453_33920804	0/0	c0006	642	1	0	0	0	0	1	copy fasta	ATP5PO	chr21	33898453	33920804
ATP5PO_chr21_33898453_33920804	0/0	c0007	642	1	1	0	0	0	0	copy fasta	ATP5PO	chr21	33898453	33920804
ATP5PO_chr21_33898453_33920804	0/0	c0008	642	1	0	1	0	0	0	copy fasta	ATP5PO	chr21	33898453	33920804
ATP5PO_chr21_33898453_33920804	0/0	c0009	642	1	0	1	0	0	0	copy fasta	ATP5PO	chr21	33898453	33920804
ATP6AP1_chrX_154423677_154441516	1/1	c0001	1413	232	45	41	109	8	27	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	c0002	1413	40	8	18	11	1	2	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	c0003	1419	13	12	1	0	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	c0004	1419	8	7	1	0	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	c0005	1413	3	3	0	0	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	c0006	1412	1	0	0	0	0	1	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	c0007	1412	1	0	0	1	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	c0008	1413	1	0	0	1	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	c0009	1413	1	0	1	0	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	c0010	1411	1	0	0	1	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	c0011	1422	1	1	0	0	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP2_chrX_40575970_40611848	1/1	c0001	1053	222	42	36	112	9	21	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	c0002	1053	54	20	11	23	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	c0003	1053	7	6	1	0	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	c0004	1053	5	5	0	0	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	c0005	1053	5	0	4	0	0	1	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	c0006	1053	2	2	0	0	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	c0007	1053	2	0	2	0	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848