JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC35G4_chr18_11604596_11615612	0/0	c0009	1017	7	7	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0010	1017	6	5	1	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0011	1017	5	0	0	5	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0012	1017	4	4	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0013	1017	3	3	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0014	1017	2	0	0	2	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0015	1017	2	0	0	2	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0016	1017	2	2	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0017	1017	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0018	1017	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0019	1017	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0020	1017	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0021	1017	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0022	1017	1	0	0	1	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0023	1017	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0024	1017	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0025	1017	1	0	0	1	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0026	1017	1	0	0	0	0	1	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0027	1017	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0028	1017	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	c0029	1017	1	0	0	1	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G5_chr8_11326012_11337360	0/0	c0001	1017	128	1	23	84	5	15	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0002	1017	86	35	15	24	4	8	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0003	1017	60	3	11	44	0	2	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	1/1	c0004	1017	50	4	22	0	8	14	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0005	1017	44	14	2	21	0	7	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0006	1017	9	9	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0007	1017	7	6	1	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0008	1017	7	7	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0009	1017	6	6	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0010	1017	3	3	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0011	1017	3	2	0	1	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0012	1017	2	2	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0013	1017	2	0	0	2	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0014	1017	1	0	0	1	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0015	1017	1	1	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0016	1017	1	0	0	1	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0017	1017	1	1	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0018	1017	1	1	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0019	1017	1	1	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0020	1017	1	0	0	1	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0021	1017	1	1	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0022	1017	1	1	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0023	1017	1	0	1	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0024	1017	1	0	0	1	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0025	1017	1	0	0	0	1	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0026	1017	1	0	1	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0027	1017	1	0	0	1	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	c0028	1017	1	0	0	1	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G6_chr17_7476446_7488496	0/0	c0001	1017	181	23	33	103	4	18	copy fasta	SLC35G6	chr17	7476446	7488496