JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC35G6_chr17_7476446_7488496	0/0	c0002	1017	85	14	20	41	5	5	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	c0003	1017	74	28	5	24	2	15	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/1	c0004	1017	27	1	17	0	5	3	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	1/0	c0005	1017	18	15	1	0	0	1	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	c0006	1017	14	13	1	0	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	c0007	1017	3	0	3	0	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	c0008	1017	3	3	0	0	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	c0009	1017	2	0	0	2	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	c0010	1017	1	0	0	1	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	c0011	1017	1	1	0	0	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	c0012	1017	1	1	0	0	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	c0013	1017	1	1	0	0	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	c0014	1017	1	0	0	1	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC36A1_chr5_151442603_151497379	1/1	c0001	1431	361	78	56	176	12	37	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0002	1431	17	6	5	4	2	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0003	1431	6	6	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0004	1431	3	0	1	0	0	2	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0005	1431	2	0	0	2	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0006	1431	2	2	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0007	1431	2	0	2	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0008	1431	2	2	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0009	1431	2	0	2	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0010	1431	1	1	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0011	1431	1	1	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0012	1431	1	0	0	0	0	1	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0013	1431	1	0	1	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0014	1431	1	0	0	1	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0015	1431	1	0	0	1	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	c0016	1431	1	0	1	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A2_chr5_151309972_151352559	0/1	c0001	1452	93	5	25	45	5	12	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0002	1452	85	9	10	51	2	13	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	1/0	c0003	1452	51	11	20	2	7	10	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0004	1452	30	27	1	1	0	1	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0005	1452	24	0	0	23	0	1	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0006	1452	14	12	2	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0007	1452	13	0	0	13	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0008	1452	13	11	1	0	0	1	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0009	1452	9	8	1	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0010	1452	6	2	1	2	0	1	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0011	1452	6	0	0	6	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0012	1452	2	0	2	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0013	1452	2	1	1	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0014	1452	1	0	1	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0015	1452	1	0	1	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0016	1452	1	0	0	0	0	1	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0017	1452	1	1	0	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0018	1452	1	0	0	1	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0019	1452	1	1	0	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0020	1452	1	0	0	1	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0021	1452	1	0	0	1	0	0	copy fasta	SLC36A2	chr5	151309972	151352559