JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC36A2_chr5_151309972_151352559	0/0	c0022	1452	1	1	0	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	c0023	1452	1	1	0	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A3_chr5_151271358_151308766	0/0	c0001	1413	128	24	10	80	3	11	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/1	c0002	1413	105	15	26	42	6	15	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0003	1413	45	3	6	32	1	3	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	1/0	c0004	1413	35	1	18	2	6	7	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0005	1413	25	23	1	0	0	1	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0006	1413	17	0	0	13	0	4	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0007	1413	14	12	2	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0008	1413	6	0	0	6	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0009	1413	5	0	0	5	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0010	1413	4	4	0	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0011	1413	3	0	0	3	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0012	1413	3	1	2	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0013	1413	3	3	0	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0014	1413	2	2	0	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0015	1413	1	0	0	1	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0016	1413	1	0	1	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0017	1413	1	0	0	0	0	1	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0018	1413	1	0	0	0	0	1	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0019	1413	1	1	0	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0020	1413	1	1	0	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0021	1413	1	0	0	0	0	1	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0022	1413	1	1	0	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	c0023	1413	1	1	0	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A4_chr11_93139174_93202991	1/1	c0001	1515	353	83	57	160	12	39	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	c0002	1515	7	0	2	0	0	5	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	c0003	1515	5	0	0	5	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	c0004	1515	1	1	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	c0005	1515	1	1	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	c0006	1515	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	c0007	1515	1	0	1	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	c0008	1515	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	c0009	1515	1	1	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	c0010	1515	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC37A1_chr21_42508852_42586426	0/1	c0001	1602	205	50	39	72	9	34	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	1/0	c0002	1602	78	0	5	62	3	7	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0003	1602	22	16	5	0	1	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0004	1602	20	0	3	12	1	4	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0005	1602	4	4	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0006	1602	4	4	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0007	1602	3	3	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0008	1602	3	0	1	0	2	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0009	1602	3	1	2	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0010	1602	2	2	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0011	1602	2	2	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0012	1602	2	2	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0013	1602	2	2	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0014	1602	1	1	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0015	1602	1	1	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426