JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC37A1_chr21_42508852_42586426	0/0	c0016	1602	1	0	0	1	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0017	1602	1	0	0	1	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0018	1602	1	0	1	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	c0019	1602	1	0	0	0	0	1	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A2_chr11_125058305_125095516	1/0	c0001	1506	145	3	34	85	6	16	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/1	c0002	1506	111	38	23	27	4	18	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0003	1506	84	11	5	59	1	8	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0004	1506	43	17	7	10	2	7	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0005	1506	10	9	1	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0006	1506	9	1	2	4	2	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0007	1506	4	3	1	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0008	1506	4	0	0	4	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0009	1506	3	0	1	0	1	1	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0010	1506	2	2	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0011	1506	2	2	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0012	1506	2	2	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0013	1506	1	1	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0014	1506	1	0	0	1	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0015	1506	1	0	1	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0016	1506	1	1	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	c0017	1506	1	0	1	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A3_chr7_140328752_140403530	1/1	c0001	1485	192	45	38	72	12	23	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0002	1485	111	15	20	58	4	14	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0003	1485	8	5	2	0	0	1	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0004	1485	6	0	0	5	0	1	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0005	1485	6	6	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0006	1485	4	4	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0007	1485	3	0	0	1	0	2	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0008	1485	2	0	0	2	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0009	1485	2	0	0	0	0	2	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0010	1485	2	0	0	2	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0011	1485	2	0	2	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0012	1485	1	0	0	1	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0013	1485	1	1	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0014	1485	1	1	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0015	1485	1	1	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0016	1485	1	1	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0017	1485	1	0	0	0	0	1	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0018	1485	1	1	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	c0019	1485	1	0	0	1	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC38A10_chr17_81239811_81300307	0/1	c0001	3357	48	1	13	21	1	11	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	1/0	c0002	3360	32	5	6	11	2	7	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0003	3360	22	14	5	2	1	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0004	3360	22	2	3	13	2	2	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0005	3360	14	14	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0006	3360	14	2	6	5	1	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0007	3360	14	8	4	1	0	1	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0008	3360	8	1	6	0	0	1	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0009	3360	4	4	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0010	3360	3	1	2	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307