JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC38A10_chr17_81239811_81300307	0/0	c0011	3360	2	2	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0012	3360	2	2	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0013	3357	2	0	0	2	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0014	3360	2	2	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0015	3357	2	0	0	2	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0016	3360	1	0	0	0	1	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0017	3322	1	0	0	0	0	1	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0018	3360	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0019	3360	1	0	1	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0020	3360	1	0	0	1	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0021	3360	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0022	3360	1	0	1	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0023	3360	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0024	3360	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0025	3360	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0026	3357	1	0	0	0	0	1	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0027	3360	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0028	3360	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0029	3360	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0030	3360	1	0	0	1	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0031	3360	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0032	3360	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0033	3360	1	0	0	0	1	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0034	3360	1	0	1	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0035	3357	1	0	0	0	1	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0036	3360	1	0	0	1	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0037	3360	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	c0038	3360	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A11_chr2_164889354_164960525	1/1	c0001	1389	338	63	66	163	14	30	copy fasta	SLC38A11	chr2	164889354	164960525
SLC38A11_chr2_164889354_164960525	0/0	c0002	1389	18	0	0	17	0	1	copy fasta	SLC38A11	chr2	164889354	164960525
SLC38A11_chr2_164889354_164960525	0/0	c0003	1389	14	14	0	0	0	0	copy fasta	SLC38A11	chr2	164889354	164960525
SLC38A11_chr2_164889354_164960525	0/0	c0004	1389	3	0	0	3	0	0	copy fasta	SLC38A11	chr2	164889354	164960525
SLC38A11_chr2_164889354_164960525	0/0	c0005	1389	1	0	0	0	0	1	copy fasta	SLC38A11	chr2	164889354	164960525
SLC38A11_chr2_164889354_164960525	0/0	c0006	1389	1	1	0	0	0	0	copy fasta	SLC38A11	chr2	164889354	164960525
SLC38A11_chr2_164889354_164960525	0/0	c0007	1389	1	0	0	1	0	0	copy fasta	SLC38A11	chr2	164889354	164960525
SLC38A1_chr12_46178063_46274043	1/1	c0001	1464	315	62	58	153	14	26	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	c0002	1464	3	3	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	c0003	1464	2	2	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	c0004	1464	2	2	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	c0005	1478	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	c0006	1464	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	c0007	1464	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	c0008	1464	1	0	1	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	c0009	1464	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	c0010	1464	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	c0011	1464	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	c0012	1464	1	0	1	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A2_chr12_46353188_46377773	1/1	c0001	1521	393	90	70	179	18	34	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	c0002	1521	3	0	0	3	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	c0003	1521	3	0	0	3	0	0	copy fasta	SLC38A2	chr12	46353188	46377773