JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC38A2_chr12_46353188_46377773	0/0	c0004	1521	1	1	0	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	c0005	1521	1	0	1	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	c0006	1521	1	0	0	1	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	c0007	1521	1	0	1	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	c0008	1521	1	1	0	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A3_chr3_50200271_50226486	1/1	c0001	1515	296	54	66	132	13	29	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	c0002	1515	36	30	2	0	0	4	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	c0003	1515	7	0	0	7	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	c0004	1515	2	0	0	2	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	c0005	1515	2	2	0	0	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	c0006	1515	1	0	0	0	1	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	c0007	1515	1	0	0	0	0	1	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	c0008	1515	1	0	0	1	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A4_chr12_46759761_46830997	1/1	c0001	1644	260	61	45	119	9	24	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0002	1644	54	1	4	43	1	5	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0003	1644	42	24	1	16	0	1	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0004	1644	11	0	10	1	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0005	1644	3	3	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0006	1644	2	0	0	0	0	2	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0007	1644	1	0	0	1	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0008	1644	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0009	1644	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0010	1644	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0011	1644	1	0	0	1	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0012	1644	1	0	0	0	0	1	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0013	1644	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0014	1644	1	0	0	0	0	1	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0015	1644	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0016	1644	1	0	0	1	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0017	1644	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	c0018	1644	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A5_chrX_48453544_48475260	1/1	c0001	1419	280	75	46	118	7	32	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	c0002	1419	30	1	11	14	2	2	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	c0003	1418	1	0	0	1	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	c0004	1419	1	0	1	0	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A6_chr14_60976245_61057630	0/1	c0001	1371	205	48	41	84	8	23	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	1/0	c0002	1371	80	10	8	51	0	10	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	c0003	1371	11	0	1	8	0	2	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	c0004	1371	10	0	0	10	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	c0005	1371	3	0	0	3	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	c0006	1371	2	1	1	0	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	c0007	1371	1	0	0	1	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	c0008	1371	1	0	0	1	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	c0009	1371	1	1	0	0	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	c0010	1371	1	0	0	1	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	c0011	1371	1	0	1	0	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	c0012	1371	1	0	0	0	0	1	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	c0013	1371	1	0	0	1	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	c0014	1371	1	0	0	1	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	c0015	1371	1	0	0	1	0	0	copy fasta	SLC38A6	chr14	60976245	61057630