JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC38A7_chr16_58660109_58689770	1/1	c0001	1389	289	36	46	161	9	35	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	c0002	1389	38	13	4	4	5	12	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	c0003	1389	35	34	1	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	c0004	1389	11	10	1	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	c0005	1389	5	0	0	5	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	c0006	1389	5	0	2	3	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	c0007	1389	3	0	0	3	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	c0008	1389	2	0	2	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	c0009	1389	1	0	0	1	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	c0010	1389	1	0	0	0	0	1	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	c0011	1389	1	0	0	1	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	c0012	1389	1	1	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A8_chr16_84004667_84047795	1/1	c0001	1308	192	12	41	93	11	33	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0002	1308	131	25	29	66	4	7	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0003	1308	47	2	3	34	2	6	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0004	1308	7	7	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0005	1308	7	5	2	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0006	1308	6	6	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0007	1308	5	5	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0008	1308	5	5	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0009	1308	4	4	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0010	1308	4	2	2	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0011	1308	3	0	0	3	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0012	1308	3	1	2	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0013	1308	2	0	2	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0014	1308	2	2	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0015	1308	2	2	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0016	1308	2	2	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0017	1308	2	2	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0018	1308	2	2	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0019	1308	1	0	0	1	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0020	1308	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0021	1308	1	0	0	1	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0022	1308	1	0	0	1	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0023	1308	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0024	1308	1	0	0	1	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0025	1308	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0026	1308	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0027	1308	1	0	0	0	0	1	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0028	1308	1	0	1	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0029	1308	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0030	1308	1	0	0	0	1	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0031	1308	1	0	0	1	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0032	1308	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0033	1308	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0034	1308	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0035	1308	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0036	1308	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0037	1308	1	0	0	1	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0038	1308	1	0	0	0	0	1	copy fasta	SLC38A8	chr16	84004667	84047795