JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC38A8_chr16_84004667_84047795	0/0	c0039	1308	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	c0040	1308	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A9_chr5_55620848_55717324	1/0	c0001	1686	183	50	22	91	4	15	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/1	c0002	1686	134	23	26	64	6	14	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	c0003	1686	16	8	1	6	0	1	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	c0004	1686	3	0	3	0	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	c0005	1686	3	3	0	0	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	c0006	1686	2	2	0	0	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	c0007	1686	2	1	1	0	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	c0008	1686	1	0	0	1	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	c0009	1686	1	0	0	1	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	c0010	1686	1	0	1	0	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	c0011	1686	1	1	0	0	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	c0012	1686	1	0	0	1	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	c0013	1686	1	1	0	0	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	c0014	1686	1	1	0	0	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC39A10_chr2_195652226_195742700	1/1	c0001	2496	360	79	63	172	12	32	copy fasta	SLC39A10	chr2	195652226	195742700
SLC39A10_chr2_195652226_195742700	0/0	c0002	2496	11	11	0	0	0	0	copy fasta	SLC39A10	chr2	195652226	195742700
SLC39A10_chr2_195652226_195742700	0/0	c0003	2496	2	2	0	0	0	0	copy fasta	SLC39A10	chr2	195652226	195742700
SLC39A10_chr2_195652226_195742700	0/0	c0004	2496	1	0	0	1	0	0	copy fasta	SLC39A10	chr2	195652226	195742700
SLC39A10_chr2_195652226_195742700	0/0	c0005	2496	1	0	0	1	0	0	copy fasta	SLC39A10	chr2	195652226	195742700
SLC39A10_chr2_195652226_195742700	0/0	c0006	2496	1	0	1	0	0	0	copy fasta	SLC39A10	chr2	195652226	195742700
SLC39A11_chr17_72640949_73097688	0/1	c0001	1008	99	25	21	37	6	9	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	1/0	c0002	1008	13	11	1	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0003	1008	13	2	2	6	0	3	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0004	1008	12	10	2	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0005	1008	11	6	1	3	0	1	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0006	1008	6	4	1	1	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0007	1008	4	3	1	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0008	1008	3	0	0	3	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0009	1008	2	2	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0010	1008	2	2	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0011	1008	2	0	0	2	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0012	1008	1	1	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0013	1008	1	1	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0014	1008	1	0	1	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0015	1008	1	1	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0016	1008	1	1	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0017	1008	1	1	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0018	1008	1	1	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0019	1008	1	1	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0020	1008	1	1	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0021	1008	1	0	0	1	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0022	1008	1	0	0	0	0	1	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0023	1008	1	0	0	1	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	c0024	1008	1	1	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A12_chr10_17946918_18048285	0/0	c0001	2076	89	5	25	47	4	8	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0002	2076	62	18	10	19	1	14	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0003	2076	60	7	9	34	3	7	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	1/0	c0004	2076	35	0	4	21	4	5	copy fasta	SLC39A12	chr10	17946918	18048285