JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC39A12_chr10_17946918_18048285	0/0	c0005	2076	28	2	8	17	0	1	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0006	2076	21	9	7	5	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0007	2076	12	12	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0008	2076	7	6	0	0	1	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0009	2076	6	6	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0010	2076	5	3	0	0	1	1	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0011	2076	5	5	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0012	2076	4	4	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0013	2076	4	4	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0014	2076	4	4	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0015	2076	4	0	1	0	2	1	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0016	2076	3	3	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0017	2076	3	3	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0018	2076	2	0	1	1	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0019	2076	2	2	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/1	c0020	2076	2	0	0	1	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0021	2076	1	0	1	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0022	2076	1	0	0	0	0	1	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0023	2076	1	1	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0024	2076	1	0	0	1	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0025	2076	1	1	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0026	2076	1	0	0	0	0	1	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0027	2076	1	0	0	0	0	1	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0028	2076	1	1	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0029	2076	1	0	0	1	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	c0030	2076	1	0	0	1	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A13_chr11_47403590_47421496	0/1	c0001	1116	254	71	35	122	6	19	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A13_chr11_47403590_47421496	0/0	c0002	1116	98	3	14	57	7	17	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A13_chr11_47403590_47421496	0/0	c0003	1116	26	4	12	2	5	3	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A13_chr11_47403590_47421496	1/0	c0004	1116	20	18	0	1	0	0	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A13_chr11_47403590_47421496	0/0	c0005	1116	3	0	3	0	0	0	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A13_chr11_47403590_47421496	0/0	c0006	1116	2	0	0	2	0	0	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A13_chr11_47403590_47421496	0/0	c0007	1116	2	0	0	0	0	2	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A13_chr11_47403590_47421496	0/0	c0008	1116	1	0	0	0	0	1	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A13_chr11_47403590_47421496	0/0	c0009	1116	1	0	0	1	0	0	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A13_chr11_47403590_47421496	0/0	c0010	1116	1	0	0	1	0	0	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A14_chr8_22362278_22427736	0/1	c0001	1479	92	1	19	54	5	12	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	1/0	c0002	1479	76	5	23	29	5	13	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0003	1473	41	39	1	1	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0004	1473	36	7	8	17	3	1	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0005	1473	30	7	4	11	1	7	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0006	1479	14	1	0	12	0	1	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0007	1473	12	11	1	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0008	1479	5	4	0	1	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0009	1479	5	4	0	1	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0010	1479	3	3	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0011	1473	2	2	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0012	1479	2	0	0	0	0	2	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0013	1473	1	1	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0014	1473	1	0	1	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736