JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC39A14_chr8_22362278_22427736	0/0	c0015	1473	1	0	1	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0016	1473	1	1	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0017	1479	1	0	0	1	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	c0018	1479	1	0	0	1	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A1_chr1_153954110_153968537	1/1	c0001	975	390	85	71	175	13	44	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	c0002	975	2	0	0	2	0	0	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	c0003	975	1	0	1	0	0	0	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	c0004	975	1	0	0	0	1	0	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	c0005	975	1	1	0	0	0	0	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	c0006	975	1	0	0	1	0	0	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A2_chr14_20994293_21006871	0/1	c0001	930	166	14	39	94	4	14	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0002	930	162	56	17	63	8	18	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	1/0	c0003	930	101	5	24	55	4	12	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0004	930	7	7	0	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0005	930	6	5	1	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0006	930	5	4	1	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0007	930	3	0	3	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0008	930	3	3	0	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0009	930	2	0	0	2	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0010	930	2	2	0	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0011	930	2	0	0	2	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0012	930	1	0	0	1	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0013	930	1	0	1	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0014	930	1	0	0	1	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0015	930	1	0	0	1	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0016	930	1	1	0	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0017	930	1	0	0	1	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	c0018	930	1	1	0	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A3_chr19_2727524_2745017	0/0	c0001	945	229	70	19	117	5	18	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	1/1	c0002	945	137	6	46	63	9	11	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	c0003	945	29	12	8	2	4	3	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	c0004	945	3	0	0	3	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	c0005	945	3	3	0	0	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	c0006	945	2	0	0	2	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	c0007	945	1	0	0	1	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	c0008	945	1	1	0	0	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	c0009	945	1	0	1	0	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	c0010	945	1	0	0	1	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	c0011	945	1	0	0	1	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	c0012	945	1	0	0	1	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	c0013	945	1	0	0	1	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A4_chr8_144407414_144421844	0/0	c0001	1944	106	0	23	69	1	13	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/1	c0002	1944	73	1	18	48	3	2	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0003	1944	66	2	16	32	7	9	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0004	1944	37	34	3	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0005	1944	31	1	3	16	0	11	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0006	1944	16	16	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0007	1944	9	9	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0008	1944	9	0	5	4	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0009	1944	8	8	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844