JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC39A4_chr8_144407414_144421844	0/0	c0010	1944	6	6	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0011	1944	6	0	0	6	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0012	1944	5	0	4	1	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0013	1944	4	2	2	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0014	1944	4	0	2	0	1	1	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0015	1944	4	0	1	1	0	2	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0016	1944	4	0	0	0	4	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0017	1944	3	0	3	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	1/0	c0018	1944	3	2	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0019	1944	2	2	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0020	1944	2	2	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0021	1944	2	2	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0022	1944	2	0	0	2	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0023	1944	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0024	1944	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0025	1944	1	0	0	0	0	1	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0026	1944	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0027	1944	1	0	0	1	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0028	1944	1	0	0	0	0	1	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0029	1944	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0030	1944	1	0	0	1	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0031	1944	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0032	1944	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0033	1944	1	0	0	1	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0034	1944	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0035	1944	1	0	0	1	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0036	1944	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0037	1944	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0038	1944	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0039	1944	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0040	1944	1	0	0	1	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0041	1944	1	0	0	0	0	1	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	c0042	1944	1	0	0	0	0	1	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A5_chr12_56225051_56242846	1/1	c0001	1623	350	83	64	152	14	35	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0002	1623	18	0	4	12	2	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0003	1623	3	3	0	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0004	1623	3	1	0	0	2	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0005	1623	3	0	0	3	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0006	1623	2	0	0	2	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0007	1623	1	0	1	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0008	1623	1	0	0	1	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0009	1623	1	0	1	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0010	1623	1	0	0	1	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0011	1623	1	1	0	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0012	1623	1	1	0	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0013	1623	1	0	0	1	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0014	1623	1	1	0	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0015	1623	1	0	0	0	0	1	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0016	1623	1	1	0	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0017	1623	1	1	0	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846