JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC39A5_chr12_56225051_56242846	0/0	c0018	1623	1	0	0	1	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	c0019	1623	1	0	0	1	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A6_chr18_36103531_36134340	0/1	c0001	2268	234	48	29	119	8	29	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	c0002	2268	91	17	22	41	2	9	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	c0003	2268	66	12	8	42	2	2	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	1/0	c0004	2268	10	8	1	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	c0005	2250	4	4	0	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	c0006	2268	1	0	1	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	c0007	2268	1	1	0	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	c0008	2268	1	0	1	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	c0009	2268	1	1	0	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	c0010	2268	1	1	0	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A7_chr6_33195867_33209437	0/1	c0001	1410	349	83	66	149	18	32	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	c0002	1410	18	1	4	7	0	6	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	c0003	1410	12	1	6	1	0	4	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	c0004	1410	8	7	1	0	0	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	c0005	1410	2	2	0	0	0	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	c0006	1410	1	0	0	0	0	1	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	c0007	1410	1	0	0	0	0	1	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	c0008	1410	1	1	0	0	0	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	c0009	1410	1	0	0	1	0	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	c0010	1410	1	0	1	0	0	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	c0011	1410	1	1	0	0	0	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A8_chr4_102256666_102350482	1/1	c0001	1383	198	70	46	51	10	19	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	c0002	1383	44	9	13	14	2	6	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	c0003	1383	7	6	1	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	c0004	1383	5	0	1	0	0	4	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	c0005	1383	3	2	1	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	c0006	1383	2	0	2	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	c0007	1383	2	2	0	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	c0008	1383	1	1	0	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	c0009	1383	1	0	0	1	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	c0010	1383	1	1	0	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	c0011	1383	1	1	0	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	c0012	1383	1	0	0	0	0	1	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A9_chr14_69393692_69467390	1/1	c0001	924	302	87	43	114	18	38	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	c0002	924	17	0	0	17	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	c0003	924	3	2	1	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	c0004	924	1	0	1	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	c0005	924	1	0	1	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	c0006	924	1	1	0	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	c0007	924	1	0	0	1	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC3A1_chr2_44270480_44326494	0/1	c0001	2058	134	10	32	60	10	21	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	1/0	c0002	2058	103	13	26	57	1	5	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0003	2058	95	63	12	8	3	9	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0004	2058	6	4	1	1	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0005	2058	2	0	0	2	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0006	2058	2	0	0	2	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0007	2058	1	0	0	1	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0008	2058	1	0	0	1	0	0	copy fasta	SLC3A1	chr2	44270480	44326494