JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC3A1_chr2_44270480_44326494	0/0	c0009	2058	1	0	0	1	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0010	2058	1	1	0	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0011	2058	1	1	0	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0012	2058	1	0	0	1	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0013	2058	1	0	1	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0014	2058	1	0	0	0	0	1	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0015	2058	1	1	0	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0016	2058	1	1	0	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0017	2058	1	1	0	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	c0018	2058	1	1	0	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A2_chr11_62875896_62893860	1/0	c0001	1590	341	73	60	156	12	39	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/1	c0002	1590	63	2	14	40	4	2	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	c0003	1590	8	8	0	0	0	0	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	c0004	1590	8	8	0	0	0	0	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	c0005	1590	2	2	0	0	0	0	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	c0006	1590	2	0	1	0	0	1	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	c0007	1590	1	1	0	0	0	0	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	c0008	1590	1	0	0	1	0	0	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	c0009	1590	1	0	0	0	0	1	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	c0010	1590	1	0	1	0	0	0	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	c0011	1590	1	0	0	1	0	0	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	c0012	1590	1	0	0	0	0	1	copy fasta	SLC3A2	chr11	62875896	62893860
SLC40A1_chr2_189555590_189585786	0/1	c0001	1716	177	12	37	92	7	28	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	1/0	c0002	1716	138	53	25	34	9	16	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	c0003	1716	12	12	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	c0004	1716	7	7	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	c0005	1716	7	7	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	c0006	1716	2	2	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	c0007	1716	2	2	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	c0008	1716	1	1	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC41A1_chr1_205784095_205818198	1/0	c0001	1542	265	90	42	108	5	19	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/1	c0002	1542	106	2	10	72	4	17	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	c0003	1542	29	1	20	0	5	3	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	c0004	1542	1	1	0	0	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	c0005	1542	1	0	0	0	0	1	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A2_chr12_104796801_104963290	1/1	c0001	1722	298	66	45	154	4	27	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	c0002	1722	36	6	5	23	0	2	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	c0003	1722	34	8	5	17	2	2	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	c0004	1722	9	6	3	0	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	c0005	1722	5	0	0	2	0	3	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	c0006	1722	1	0	0	1	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	c0007	1722	1	0	0	1	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	c0008	1722	1	0	0	1	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	c0009	1722	1	0	0	1	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A3_chr3_126001357_126089124	0/1	c0001	1464	203	56	37	79	5	25	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	c0002	1464	99	5	23	57	5	9	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	c0003	1464	43	12	2	27	0	2	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	c0004	1464	7	6	1	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	c0005	1464	3	0	0	1	2	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	c0006	1464	3	0	3	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124