JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC41A3_chr3_126001357_126089124	0/0	c0007	1464	3	3	0	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	c0008	1464	2	2	0	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	c0009	1464	2	2	0	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	1/0	c0010	1464	1	0	0	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	c0011	1464	1	0	0	1	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	c0012	1464	1	0	0	0	0	1	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	c0013	1464	1	0	0	0	0	1	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	c0014	1464	1	0	0	1	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC43A1_chr11_57479534_57520702	1/1	c0001	1680	285	68	67	106	15	27	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	c0002	1680	7	7	0	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	c0003	1680	6	1	4	0	1	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	c0004	1680	3	0	0	3	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	c0005	1680	2	0	0	2	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	c0006	1680	2	2	0	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	c0007	1680	2	2	0	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	c0008	1680	2	2	0	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	c0009	1680	1	1	0	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	c0010	1680	1	0	0	1	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	c0011	1680	1	1	0	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	c0012	1680	1	0	0	0	0	1	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	c0013	1680	1	0	1	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A2_chr17_1564268_1633834	1/0	c0001	1710	279	69	46	127	7	29	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/1	c0002	1710	70	4	22	15	9	19	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	c0003	1710	8	7	1	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	c0004	1710	8	5	1	0	1	1	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	c0005	1710	5	5	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	c0006	1710	2	2	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	c0007	1710	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	c0008	1710	1	0	1	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	c0009	1710	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	c0010	1696	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	c0011	1710	1	0	0	0	1	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	c0012	1710	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	c0013	1710	1	0	0	0	0	1	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	c0014	1710	1	0	1	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	c0015	1710	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	c0016	1710	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A3_chr11_57401954_57432121	1/1	c0001	1476	286	67	45	118	15	39	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	c0002	1476	7	6	1	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	c0003	1476	6	6	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	c0004	1476	5	0	4	0	1	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	c0005	1476	5	0	0	5	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	c0006	1476	4	0	2	2	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	c0007	1476	3	0	0	3	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	c0008	1476	3	0	0	0	0	3	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	c0009	1476	2	2	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	c0010	1476	2	0	0	2	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	c0011	1476	2	1	1	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	c0012	1476	1	1	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	c0013	1476	1	1	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121