JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC43A3_chr11_57401954_57432121	0/0	c0014	1476	1	0	0	1	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	c0015	1476	1	0	1	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	c0016	1476	1	0	0	1	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC44A1_chr9_105239651_105402346	1/1	c0001	1974	91	37	17	25	6	4	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	c0002	1974	50	41	7	0	0	2	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	c0003	1974	1	0	0	1	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A2_chr19_10620553_10649557	0/1	c0001	2121	274	44	58	129	14	28	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	1/0	c0002	2121	99	1	13	70	4	10	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	c0003	2121	10	10	0	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	c0004	2121	6	5	1	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	c0005	2121	2	0	0	2	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	c0006	2121	2	2	0	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	c0007	2121	1	1	0	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	c0008	2121	1	0	0	1	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	c0009	2121	1	1	0	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	c0010	2121	1	0	1	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	c0011	2121	1	1	0	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	c0012	2121	1	1	0	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	c0013	2121	1	0	1	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	c0014	2121	1	0	0	0	0	1	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	c0015	2121	1	0	0	0	0	1	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A3_chr1_94815357_94900246	0/1	c0001	1962	239	33	52	123	7	23	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	1/0	c0002	1962	50	31	10	0	1	7	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0003	1962	36	14	5	6	5	6	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0004	1962	15	9	5	0	0	1	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0005	1962	7	0	0	7	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0006	1962	2	0	1	0	1	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0007	1962	1	0	1	0	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0008	1962	1	0	0	1	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0009	1962	1	0	0	1	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0010	1962	1	0	0	1	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0011	1962	1	1	0	0	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0012	1962	1	0	0	1	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0013	1962	1	1	0	0	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0014	1962	1	0	0	1	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0015	1962	1	0	0	1	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0016	1962	1	0	0	0	0	1	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	c0017	1962	1	1	0	0	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A4_chr6_31858192_31883997	0/0	c0001	2133	131	41	16	57	5	12	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0002	2133	97	20	22	35	6	14	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0003	2133	55	21	14	11	3	6	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/1	c0004	2133	54	1	13	32	1	6	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0005	2133	51	5	12	31	1	2	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0006	2133	12	0	0	12	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0007	2133	6	0	3	1	0	2	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0008	2133	5	1	1	3	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0009	2133	3	2	1	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0010	2133	2	2	0	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0011	2133	2	0	0	2	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0012	2133	1	1	0	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997