JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC44A4_chr6_31858192_31883997	0/0	c0013	2133	1	0	1	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0014	2133	1	1	0	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0015	2133	1	0	0	1	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0016	2133	1	0	0	0	1	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0017	2133	1	0	0	1	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0018	2133	1	0	0	0	0	1	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0019	2133	1	0	0	0	1	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0020	2133	1	0	1	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0021	2133	1	0	1	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0022	2133	1	1	0	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0023	2133	1	0	1	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0024	2133	1	0	0	1	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0025	2133	1	0	0	0	0	1	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	c0026	2133	1	0	0	1	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A5_chr1_75197129_75616114	0/1	c0001	2154	79	30	17	13	2	16	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	c0002	2154	22	10	9	1	0	2	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	c0003	2154	20	9	6	1	2	2	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	c0004	2154	11	3	5	0	0	3	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	c0005	2154	8	8	0	0	0	0	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	c0006	2154	7	5	2	0	0	0	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	c0007	2154	5	4	1	0	0	0	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	c0008	2154	1	1	0	0	0	0	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	c0009	2154	1	0	0	0	0	1	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	c0010	2154	1	0	0	1	0	0	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	1/0	c0011	2154	1	0	0	0	0	0	copy fasta	SLC44A5	chr1	75197129	75616114
SLC45A1_chr1_8313114_8349165	0/1	c0001	2247	195	29	37	102	4	22	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0002	2247	58	12	7	27	5	7	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0003	2247	40	25	4	4	2	5	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0004	2247	29	3	10	3	3	10	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0005	2247	10	1	0	9	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0006	2247	9	9	0	0	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0007	2247	8	1	5	1	0	1	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	1/0	c0008	2247	8	4	2	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0009	2247	7	0	3	0	2	2	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0010	2247	7	7	0	0	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0011	2241	1	0	0	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0012	2247	1	0	0	0	0	1	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0013	2247	1	0	0	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0014	2236	1	0	1	0	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0015	2247	1	0	0	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0016	2247	1	1	0	0	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0017	2247	1	1	0	0	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0018	2247	1	0	1	0	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0019	2247	1	0	0	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0020	2247	1	0	0	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0021	2247	1	1	0	0	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0022	2247	1	0	0	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0023	2247	1	0	0	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0024	2247	1	0	0	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0025	2247	1	1	0	0	0	0	copy fasta	SLC45A1	chr1	8313114	8349165