JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC45A1_chr1_8313114_8349165	0/0	c0026	2247	1	1	0	0	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	c0027	2247	1	0	0	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A2_chr5_33939623_33989693	0/0	c0001	1593	191	73	11	95	1	11	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/0	c0002	1593	101	7	15	68	2	9	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	1/0	c0003	1593	91	17	6	47	0	20	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/1	c0004	1593	51	1	36	0	9	4	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/0	c0005	1593	1	0	0	1	0	0	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/0	c0006	1593	1	0	1	0	0	0	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/0	c0007	1593	1	0	1	0	0	0	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/0	c0008	1593	1	0	0	1	0	0	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/0	c0009	1593	1	0	0	1	0	0	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/0	c0010	1593	1	0	0	1	0	0	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A3_chr1_205652851_205685509	1/1	c0001	1662	340	74	60	147	14	43	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0002	1626	28	0	8	20	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0003	1662	11	11	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0004	1662	6	6	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0005	1662	5	5	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0006	1662	1	0	0	0	0	1	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0007	1662	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0008	1662	1	1	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0009	1662	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0010	1662	1	0	0	0	0	1	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0011	1662	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0012	1662	1	1	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0013	1662	1	1	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0014	1662	1	0	1	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0015	1662	1	0	0	0	0	1	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0016	1662	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0017	1662	1	1	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0018	1662	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	c0019	1662	1	0	1	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A4_chr8_141202174_141313288	0/0	c0001	2427	57	7	11	20	7	12	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	1/0	c0002	2427	33	8	11	7	1	5	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0003	2427	24	5	2	13	1	3	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/1	c0004	2427	13	5	1	5	0	1	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0005	2427	9	8	1	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0006	2427	6	6	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0007	2427	5	5	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0008	2427	4	4	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0009	2427	4	4	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0010	2427	3	1	1	1	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0011	2427	3	0	0	2	1	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0012	2427	3	0	1	0	0	2	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0013	2427	2	2	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0014	2427	2	2	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0015	2427	2	0	0	2	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0016	2427	2	0	2	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0017	2427	2	2	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0018	2427	2	1	0	0	1	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0019	2427	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288