JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC45A4_chr8_141202174_141313288	0/0	c0020	2427	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0021	2427	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0022	2427	1	0	1	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0023	2427	1	0	0	1	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0024	2427	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0025	2427	1	0	1	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0026	2427	1	0	0	0	0	1	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0027	2427	1	0	0	0	1	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0028	2427	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0029	2427	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	c0030	2427	1	0	0	1	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC46A1_chr17_28389642_28411212	1/1	c0001	1380	385	89	76	162	16	40	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	c0002	1380	5	5	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	c0003	1380	1	0	1	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	c0004	1380	1	0	1	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	c0005	1380	1	1	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	c0006	1380	1	1	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A2_chr9_112873920_112895876	0/1	c0001	1428	221	15	36	141	7	21	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0002	1428	102	37	21	25	7	12	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	1/0	c0003	1428	66	9	20	25	4	7	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0004	1428	7	7	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0005	1428	6	6	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0006	1428	6	0	0	5	0	1	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0007	1428	6	6	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0008	1428	6	0	0	6	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0009	1428	5	4	1	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0010	1428	3	3	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0011	1428	3	3	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0012	1428	3	3	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0013	1428	2	2	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0014	1428	1	1	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0015	1428	1	0	0	1	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0016	1428	1	0	0	1	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0017	1428	1	1	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0018	1428	1	1	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0019	1428	1	1	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0020	1428	1	0	1	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0021	1410	1	1	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0022	1428	1	0	0	0	0	1	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	c0023	1428	1	0	1	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A3_chr13_28695080_28723970	1/1	c0001	1386	402	85	64	193	14	44	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	c0002	1386	6	0	3	0	2	1	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	c0003	1386	3	3	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	c0004	1386	3	3	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	c0005	1386	2	0	2	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	c0006	1386	2	0	2	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	c0007	1386	1	0	0	1	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	c0008	1386	1	1	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	c0009	1386	1	0	1	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	c0010	1398	1	0	0	1	0	0	copy fasta	SLC46A3	chr13	28695080	28723970