JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC46A3_chr13_28695080_28723970	0/0	c0011	1386	1	1	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	c0012	1386	1	0	0	1	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	c0013	1386	1	1	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	c0014	1386	1	0	0	0	0	1	copy fasta	SLC46A3	chr13	28695080	28723970
SLC47A1_chr17_19528854_19584034	1/1	c0001	1713	294	67	59	119	12	35	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0002	1713	16	1	3	12	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0003	1713	7	7	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0004	1713	5	5	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0005	1713	2	2	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0006	1713	2	0	1	1	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0007	1713	2	2	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0008	1713	2	0	0	0	2	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0009	1713	1	1	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0010	1713	1	0	1	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0011	1713	1	0	0	0	0	1	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0012	1713	1	1	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0013	1713	1	0	0	1	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0014	1713	1	0	0	1	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0015	1713	1	0	0	1	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	c0016	1713	1	0	0	1	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A2_chr17_19673317_19721584	1/1	c0001	1701	170	38	39	65	7	19	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0002	1701	103	8	20	57	6	12	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0003	1701	34	7	10	15	1	1	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0004	1701	11	0	0	11	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0005	1701	11	3	4	4	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0006	1701	10	10	0	0	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0007	1701	10	7	1	0	2	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0008	1701	5	5	0	0	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0009	1701	3	1	0	0	0	2	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0010	1701	2	2	0	0	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0011	1701	1	0	0	1	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0012	1701	1	0	0	1	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0013	1701	1	0	1	0	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0014	1701	1	0	1	0	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0015	1701	1	0	1	0	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0016	1701	1	1	0	0	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	c0017	1701	1	0	1	0	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC48A1_chr12_47768238_47787751	1/1	c0001	441	434	97	72	198	18	47	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	c0002	441	1	1	0	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	c0003	441	1	0	0	0	0	1	copy fasta	SLC48A1	chr12	47768238	47787751
SLC49A3_chr4_676829_694151	1/1	c0001	1680	322	83	74	110	13	40	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0002	1680	51	0	3	48	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0003	1680	10	0	0	10	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0004	1680	3	0	0	0	2	1	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0005	1680	3	0	0	3	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0006	1680	3	3	0	0	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0007	1680	3	1	1	0	0	1	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0008	1680	3	0	1	0	1	1	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0009	1680	3	2	1	0	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0010	1680	2	0	0	2	0	0	copy fasta	SLC49A3	chr4	676829	694151