JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC49A3_chr4_676829_694151	0/0	c0011	1680	1	0	0	0	0	1	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0012	1680	1	1	0	0	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0013	1680	1	0	0	1	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0014	1680	1	1	0	0	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0015	1680	1	1	0	0	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0016	1680	1	0	1	0	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0017	1651	1	0	0	1	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0018	1680	1	0	0	1	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	c0019	1680	1	0	1	0	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A4_chr3_122790069_122886139	1/1	c0001	1437	339	79	62	138	12	46	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	c0002	1437	2	0	0	2	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	c0003	1437	1	1	0	0	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC4A10_chr2_161619416_161990270	1/1	c0001	3357	95	54	13	13	5	8	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A10_chr2_161619416_161990270	0/0	c0002	3357	11	1	5	2	1	2	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A10_chr2_161619416_161990270	0/0	c0003	3357	9	0	0	8	0	1	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A10_chr2_161619416_161990270	0/0	c0004	3357	1	1	0	0	0	0	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A10_chr2_161619416_161990270	0/0	c0005	3357	1	0	0	0	0	1	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A10_chr2_161619416_161990270	0/0	c0006	3357	1	0	0	1	0	0	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A11_chr20_3222422_3244190	1/1	c0001	2628	166	11	43	82	7	21	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0002	2628	142	32	23	66	5	16	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0003	2628	46	3	6	28	4	5	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0004	2628	25	8	0	14	0	3	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0005	2628	10	10	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0006	2628	5	0	3	0	2	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0007	2628	5	4	1	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0008	2628	4	1	3	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0009	2628	3	3	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0010	2628	3	2	0	1	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0011	2628	2	2	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0012	2628	2	0	0	2	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0013	2628	2	2	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0014	2628	2	2	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0015	2628	2	2	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0016	2628	2	0	0	2	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0017	2628	2	2	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0018	2628	2	0	0	2	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0019	2628	2	1	1	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0020	2628	1	1	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0021	2628	1	0	1	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0022	2628	1	0	0	1	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0023	2628	1	1	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0024	2628	1	0	0	1	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0025	2628	1	1	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0026	2628	1	1	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0027	2628	1	0	0	0	0	1	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0028	2628	1	1	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0029	2628	1	0	0	1	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0030	2628	1	0	1	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0031	2628	1	1	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0032	2628	1	0	0	1	0	0	copy fasta	SLC4A11	chr20	3222422	3244190