JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC4A11_chr20_3222422_3244190	0/0	c0033	2628	1	0	1	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0034	2628	1	0	0	1	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0035	2628	1	1	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0036	2628	1	1	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0037	2628	1	0	1	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	c0038	2628	1	1	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A1AP_chr2_27658889_27699969	1/0	c0001	2229	227	38	36	127	7	18	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/1	c0002	2229	74	22	15	18	7	11	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	c0003	2229	15	10	4	0	0	1	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	c0004	2229	5	0	0	5	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	c0005	2229	2	2	0	0	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	c0006	2229	2	2	0	0	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	c0007	2229	2	2	0	0	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	c0008	2229	1	1	0	0	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	c0009	2229	1	0	0	1	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	c0010	2229	1	0	1	0	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	c0011	2229	1	0	0	1	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	c0012	2229	1	0	0	1	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	c0013	2229	1	1	0	0	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	c0014	2229	1	0	0	1	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1_chr17_44243390_44273135	1/1	c0001	2736	272	51	56	126	9	28	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0002	2736	37	9	7	20	0	1	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0003	2736	19	0	0	19	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0004	2736	10	10	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0005	2736	9	0	3	6	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0006	2736	8	0	0	5	1	2	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0007	2736	6	0	3	0	3	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0008	2736	6	1	3	0	1	1	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0009	2736	6	0	0	5	1	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0010	2736	5	5	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0011	2736	3	0	3	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0012	2736	3	3	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0013	2736	2	2	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0014	2736	2	0	0	2	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0015	2736	2	2	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0016	2736	2	2	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0017	2736	2	0	0	0	0	2	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0018	2736	1	0	0	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0019	2736	1	0	0	0	1	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0020	2736	1	0	0	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0021	2736	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0022	2736	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0023	2736	1	0	0	0	0	1	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0024	2736	1	0	1	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0025	2736	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0026	2736	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0027	2736	1	0	0	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0028	2736	1	0	0	0	0	1	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	c0029	2736	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A2_chr7_151054589_151081523	0/0	c0001	3726	106	7	29	55	4	11	copy fasta	SLC4A2	chr7	151054589	151081523