JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC4A2_chr7_151054589_151081523	0/0	c0002	3726	90	10	17	45	6	12	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0003	3726	28	4	5	17	0	2	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0004	3726	26	1	0	25	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0005	3726	22	16	4	0	1	1	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	1/0	c0006	3726	18	3	1	4	2	7	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0007	3726	13	1	2	1	2	7	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0008	3726	12	10	2	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0009	3726	11	10	0	1	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0010	3726	10	0	0	10	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/1	c0011	3726	9	4	2	0	1	1	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0012	3726	7	0	1	6	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0013	3720	6	6	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0014	3726	4	0	0	4	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0015	3726	4	4	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0016	3726	4	4	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0017	3726	4	1	0	2	0	1	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0018	3720	3	3	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0019	3726	2	0	1	1	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0020	3726	1	0	0	1	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0021	3726	1	0	0	0	0	1	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0022	3726	1	0	0	1	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0023	3726	1	1	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0024	3726	1	0	0	1	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0025	3726	1	0	0	1	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0026	3726	1	0	0	1	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0027	3726	1	0	0	1	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0028	3726	1	1	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0029	3726	1	0	1	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0030	3726	1	1	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0031	3726	1	1	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0032	3726	1	1	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0033	3726	1	0	0	1	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0034	3726	1	1	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0035	3726	1	0	0	0	1	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0036	3726	1	0	0	0	1	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0037	3726	1	0	0	0	0	1	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0038	3726	1	1	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0039	3726	1	1	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0040	3726	1	0	0	1	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0041	3726	1	1	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0042	3726	1	1	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0043	3720	1	1	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0044	3720	1	1	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0045	3726	1	0	1	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	c0046	3726	1	0	0	1	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A3_chr2_219622630_219646971	0/1	c0001	3699	189	21	41	90	9	27	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0002	3699	90	26	13	39	1	11	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0003	3699	13	13	0	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0004	3699	11	10	1	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0005	3699	10	10	0	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971