JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC4A3_chr2_219622630_219646971	0/0	c0006	3699	6	6	0	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0007	3699	5	0	2	3	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0008	3699	4	3	1	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0009	3699	3	0	2	0	1	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0010	3699	3	0	0	3	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0011	3699	3	3	0	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0012	3699	2	0	2	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0013	3717	2	0	1	0	1	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0014	3699	2	0	0	0	0	2	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	1/0	c0015	3699	1	0	0	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0016	3699	1	0	0	0	0	1	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0017	3699	1	1	0	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0018	3699	1	1	0	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0019	3699	1	0	0	0	0	1	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0020	3699	1	0	1	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0021	3699	1	1	0	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0022	3699	1	0	0	0	0	1	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0023	3699	1	0	0	1	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0024	3699	1	0	0	1	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0025	3699	1	0	0	1	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0026	3699	1	0	1	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0027	3699	1	0	0	0	0	1	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0028	3699	1	1	0	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0029	3699	1	0	0	1	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0030	3699	1	0	0	1	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	c0031	3699	1	0	1	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A4_chr4_71182259_71577083	0/1	c0001	3240	96	35	8	31	2	19	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	1/0	c0002	3240	42	27	1	9	0	4	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	c0003	3240	2	0	0	2	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	c0004	3240	2	2	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	c0005	3240	2	1	0	0	0	1	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	c0006	3240	2	0	2	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	c0007	3240	1	0	1	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	c0008	3240	1	0	0	0	0	1	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	c0009	3240	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	c0010	3240	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	c0011	3240	1	0	0	0	0	1	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	c0012	3240	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71334020_71577083	0/1	c0001	3108	151	39	27	54	6	24	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	1/0	c0002	3108	57	28	5	18	0	5	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	c0003	3108	11	0	11	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	c0004	3108	3	0	1	2	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	c0005	3108	2	2	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	c0006	3108	2	1	0	0	0	1	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	c0007	3108	1	0	0	1	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	c0008	3108	1	0	0	1	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	c0009	3108	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	c0010	3108	1	0	0	0	0	1	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	c0011	3108	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	c0012	3108	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083