JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC4A4_chr4_71334020_71577083	0/0	c0013	3108	1	0	0	0	0	1	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	c0014	3108	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A5_chr2_74211242_74348416	1/1	c0001	3366	166	42	25	83	3	11	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0002	3366	41	8	17	15	0	1	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0003	3366	33	11	4	17	1	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0004	3366	18	15	0	1	0	2	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0005	3366	10	0	1	7	0	2	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0006	3366	3	0	1	2	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0007	3366	2	2	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0008	3366	1	1	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0009	3366	1	1	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0010	3366	1	1	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0011	3366	1	0	0	1	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0012	3366	1	0	0	1	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0013	3366	1	1	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0014	3366	1	1	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0015	3366	1	1	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	c0016	3366	1	0	0	1	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A7_chr3_27367723_27489384	0/0	c0001	3780	148	39	23	56	4	26	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0002	3780	35	16	3	12	3	1	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/1	c0003	3780	34	3	11	11	3	5	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	1/0	c0004	3780	31	16	7	0	0	7	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0005	3780	17	0	0	16	0	1	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0006	3780	14	0	9	0	5	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0007	3780	11	8	3	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0008	3780	2	1	0	0	0	1	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0009	3780	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0010	3780	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0011	3780	1	0	1	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0012	3780	1	0	0	0	1	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0013	3780	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0014	3780	1	0	0	1	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0015	3780	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0016	3780	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0017	3780	1	0	0	0	0	1	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	c0018	3780	1	0	1	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A8_chr12_51419831_51520763	1/1	c0001	3282	312	71	57	138	14	30	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	c0002	3282	26	10	0	14	0	2	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	c0003	3282	7	7	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	c0004	3282	2	0	2	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	c0005	3282	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	c0006	3282	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	c0007	3282	1	0	1	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	c0008	3282	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	c0009	3282	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	c0010	3282	1	0	0	0	0	1	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	c0011	3282	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	c0012	3282	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	c0013	3282	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	c0014	3282	1	0	0	0	0	1	copy fasta	SLC4A8	chr12	51419831	51520763