JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC4A8_chr12_51419831_51520763	0/0	c0015	3282	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A9_chr5_140355194_140380141	0/0	c0001	2880	137	26	30	63	4	14	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	1/0	c0002	2880	106	34	18	31	6	16	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/1	c0003	2880	99	8	17	60	6	7	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0004	2880	9	8	1	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0005	2880	9	0	0	9	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0006	2880	6	0	0	6	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0007	2880	4	0	3	0	1	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0008	2880	4	4	0	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0009	2880	3	3	0	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0010	2880	2	2	0	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0011	2880	2	0	0	0	0	2	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0012	2880	2	2	0	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0013	2880	2	0	1	0	1	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0014	2890	1	0	0	1	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0015	2880	1	1	0	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0016	2880	1	0	1	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0017	2880	1	1	0	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0018	2880	1	0	0	1	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0019	2880	1	0	0	1	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0020	2880	1	1	0	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0021	2880	1	0	0	0	0	1	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0022	2880	1	0	0	1	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0023	2880	1	0	1	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	c0024	2880	1	0	0	1	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC50A1_chr1_155130852_155143853	1/1	c0001	666	352	94	65	125	18	48	copy fasta	SLC50A1	chr1	155130852	155143853
SLC50A1_chr1_155130852_155143853	0/0	c0002	666	1	0	0	1	0	0	copy fasta	SLC50A1	chr1	155130852	155143853
SLC50A1_chr1_155130852_155143853	0/0	c0003	666	1	0	1	0	0	0	copy fasta	SLC50A1	chr1	155130852	155143853
SLC51A_chr3_196211534_196238427	0/0	c0001	1023	194	20	24	127	5	18	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	1/1	c0002	1023	155	62	32	35	5	19	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	c0003	1023	36	3	13	10	2	8	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	c0004	1023	28	6	12	1	4	5	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	c0005	1023	4	4	0	0	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	c0006	1023	4	4	0	0	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	c0007	1023	2	0	0	0	2	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	c0008	1023	1	0	0	1	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	c0009	1023	1	0	0	1	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	c0010	1023	1	0	1	0	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	c0011	1023	1	0	0	1	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	c0012	1023	1	1	0	0	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51B_chr15_65040387_65058397	1/1	c0001	387	336	89	66	125	18	36	copy fasta	SLC51B	chr15	65040387	65058397
SLC51B_chr15_65040387_65058397	0/0	c0002	387	1	0	0	1	0	0	copy fasta	SLC51B	chr15	65040387	65058397
SLC51B_chr15_65040387_65058397	0/0	c0003	387	1	1	0	0	0	0	copy fasta	SLC51B	chr15	65040387	65058397
SLC52A1_chr17_5027602_5040426	0/1	c0001	1347	140	51	39	27	6	16	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0002	1347	125	10	17	78	4	16	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	1/0	c0003	1347	40	1	2	33	2	1	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0004	1347	34	3	13	17	0	1	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0005	1347	22	3	3	13	2	1	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0006	1347	18	7	0	11	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0007	1347	17	11	3	3	0	0	copy fasta	SLC52A1	chr17	5027602	5040426