JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC52A1_chr17_5027602_5040426	0/0	c0008	1347	6	0	0	5	1	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0009	1347	6	0	2	2	1	1	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0010	1347	3	3	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0011	1347	1	0	1	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0012	1347	1	0	0	1	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0013	1347	1	1	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0014	1347	1	0	0	0	0	1	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0015	1347	1	1	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0016	1347	1	1	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0017	1347	1	0	0	1	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0018	1347	1	0	0	0	0	1	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0019	1347	1	0	0	1	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0020	1347	1	0	0	1	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0021	1347	1	1	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0022	1347	1	1	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	c0023	1347	1	0	0	1	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A2_chr8_144353613_144366272	1/1	c0001	1338	347	88	67	134	16	40	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	c0002	1339	13	6	2	5	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	c0003	1338	13	0	1	12	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	c0004	1338	4	0	0	4	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	c0005	1338	1	0	0	1	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	c0006	1338	1	0	0	1	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	c0007	1338	1	0	0	0	0	1	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	c0008	1338	1	1	0	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	c0009	1338	1	1	0	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	c0010	1338	1	1	0	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	c0011	1338	1	1	0	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	c0012	1338	1	0	0	0	0	1	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	c0013	1338	1	0	0	1	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A3_chr20_755080_773500	1/0	c0001	1410	84	22	18	34	2	7	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0002	1410	64	39	12	3	3	7	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0003	1410	54	0	2	50	0	2	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0004	1410	35	1	4	30	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/1	c0005	1410	33	0	19	6	0	7	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0006	1410	27	1	0	26	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0007	1410	23	0	16	0	2	5	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0008	1410	22	4	2	14	0	2	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0009	1410	21	0	0	21	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0010	1410	18	2	2	8	2	4	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0011	1410	15	5	0	7	1	2	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0012	1410	10	0	2	3	0	5	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0013	1410	8	0	0	2	4	2	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0014	1410	6	0	3	0	1	2	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0015	1410	6	0	0	6	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0016	1410	6	6	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0017	1410	4	0	0	4	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0018	1410	4	4	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0019	1410	4	1	1	0	1	1	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0020	1410	3	0	0	3	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0021	1410	3	3	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500