JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC52A3_chr20_755080_773500	0/0	c0022	1410	3	3	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0023	1410	3	3	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0024	1410	2	0	0	1	0	1	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0025	1410	2	0	2	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0026	1410	1	0	0	0	0	1	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0027	1410	1	1	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0028	1410	1	1	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0029	1410	1	1	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0030	1410	1	1	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	c0031	1410	1	0	1	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC5A10_chr17_18947165_19027565	1/0	c0001	1791	101	30	18	41	2	9	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0002	1791	31	15	1	14	0	1	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/1	c0003	1809	30	11	5	4	4	5	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0004	1791	29	5	1	21	0	2	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0005	1809	27	1	17	4	1	4	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0006	1791	24	5	4	8	0	7	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0007	1791	14	0	0	13	0	1	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0008	1791	12	7	1	3	0	1	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0009	1809	12	0	7	0	2	3	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0010	1791	12	0	0	12	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0011	1791	11	4	0	4	1	2	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0012	1791	11	2	1	6	0	2	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0013	1809	10	1	1	2	2	4	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0014	1791	3	1	1	0	0	1	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0015	1791	3	0	0	3	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0016	1791	3	0	1	0	0	2	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0017	1791	3	1	2	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0018	1791	3	0	0	0	0	3	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0019	1791	1	0	1	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0020	1791	1	0	0	1	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0021	1809	1	0	1	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0022	1791	1	0	0	0	0	1	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0023	1791	1	1	0	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0024	1791	1	1	0	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0025	1791	1	0	0	1	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0026	1791	1	1	0	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0027	1791	1	0	1	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0028	1791	1	0	0	1	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0029	1791	1	0	1	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0030	1809	1	1	0	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0031	1791	1	0	0	1	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0032	1809	1	0	0	1	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	c0033	1791	1	1	0	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A11_chr16_24840963_24916626	1/0	c0001	2028	236	31	28	152	4	20	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0002	2028	31	13	6	0	5	7	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0003	2028	30	2	10	11	2	5	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0004	2028	23	13	7	0	0	3	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0005	2028	18	4	6	0	3	5	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0006	2028	7	6	1	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0007	2028	6	6	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626