JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC5A11_chr16_24840963_24916626	0/0	c0008	2028	6	5	1	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0009	2028	3	0	0	3	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0010	2028	2	2	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0011	2028	2	2	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/1	c0012	2028	1	0	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0013	2028	1	1	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0014	2028	1	1	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0015	2028	1	0	0	1	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0016	2028	1	1	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0017	2028	1	1	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0018	2028	1	0	0	1	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0019	2028	1	0	0	1	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0020	2028	1	0	1	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0021	2028	1	1	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0022	2028	1	1	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0023	2028	1	1	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0024	2028	1	1	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	c0025	2028	1	0	0	1	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A12_chr11_26662020_26727060	0/1	c0001	1857	92	4	13	55	6	13	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0002	1857	77	2	12	54	3	6	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0003	1857	62	14	18	21	3	6	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0004	1857	31	17	3	10	0	1	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0005	1857	23	19	2	1	0	1	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0006	1857	13	0	9	2	1	1	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0007	1857	13	1	1	11	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0008	1857	11	0	0	11	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0009	1857	11	0	2	6	0	3	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0010	1857	9	8	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0011	1857	7	0	4	3	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0012	1857	7	5	1	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0013	1857	7	6	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0014	1857	7	2	0	4	0	1	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	1/0	c0015	1857	5	3	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0016	1857	4	3	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0017	1857	4	0	0	4	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0018	1857	3	0	2	0	0	1	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0019	1857	2	0	0	0	0	2	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0020	1857	2	0	0	2	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0021	1857	2	2	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0022	1857	2	2	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0023	1857	2	1	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0024	1857	2	0	0	2	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0025	1857	2	2	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0026	1857	1	0	0	0	1	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0027	1857	1	0	0	0	0	1	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0028	1857	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0029	1857	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0030	1857	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0031	1857	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0032	1857	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060