JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC5A12_chr11_26662020_26727060	0/0	c0033	1857	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0034	1857	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0035	1857	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0036	1857	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	c0037	1857	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A1_chr22_32038261_32118029	1/1	c0001	1995	215	72	47	63	4	27	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	c0002	1995	11	0	1	4	1	5	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	c0003	1995	11	1	4	0	3	3	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	c0004	1995	5	5	0	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	c0005	1995	4	4	0	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	c0006	1995	3	0	0	3	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	c0007	1995	2	0	2	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	c0008	1995	1	0	0	0	0	1	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A2_chr16_31478123_31495769	1/1	c0001	2019	382	76	68	179	16	41	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	c0002	2019	6	6	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	c0003	2019	4	4	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	c0004	2019	3	3	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	c0005	2019	2	0	0	0	0	2	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	c0006	2019	2	2	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	c0007	2019	1	1	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	c0008	2019	1	0	0	1	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	c0009	2019	1	1	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	c0010	2019	1	0	0	0	0	1	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	c0011	2019	1	1	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	c0012	2019	1	0	0	1	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	c0013	2019	1	0	0	1	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A3_chr21_34068578_34111260	1/1	c0001	2157	340	84	73	135	12	34	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	c0002	2157	2	2	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	c0003	2157	1	0	1	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	c0004	2157	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A4_chr22_32213464_32260347	1/0	c0001	1980	204	58	51	51	11	32	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0002	1980	19	0	1	14	0	4	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0003	1980	18	1	10	1	2	4	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/1	c0004	1980	14	3	3	3	1	3	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0005	1980	13	13	0	0	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0006	1980	6	0	4	0	0	2	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0007	1980	4	3	0	1	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0008	1980	4	3	1	0	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0009	1980	4	0	0	3	0	1	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0010	1980	4	4	0	0	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0011	1980	3	0	1	2	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0012	1980	2	2	0	0	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0013	1980	1	0	0	1	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0014	1980	1	1	0	0	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0015	1980	1	0	0	0	0	1	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0016	1980	1	0	0	1	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0017	1980	1	0	0	1	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0018	1980	1	0	1	0	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	c0019	1980	1	0	0	0	0	1	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A5_chr19_17866945_17900174	1/1	c0001	1932	390	90	72	164	18	44	copy fasta	SLC5A5	chr19	17866945	17900174