JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC5A5_chr19_17866945_17900174	0/0	c0002	1932	4	4	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	c0003	1932	4	0	0	4	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	c0004	1932	3	0	3	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	c0005	1932	3	3	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	c0006	1932	1	0	0	0	0	1	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	c0007	1932	1	0	0	1	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	c0008	1932	1	0	0	1	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	c0009	1932	1	0	1	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	c0010	1932	1	0	0	1	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	c0011	1932	1	1	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	c0012	1932	1	0	0	0	0	1	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	c0013	1932	1	1	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	c0014	1932	1	1	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	c0015	1932	1	0	0	1	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A6_chr2_27194587_27217268	0/0	c0001	1908	152	14	27	87	8	16	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/1	c0002	1908	103	50	21	17	2	12	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	c0003	1908	15	0	12	3	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	c0004	1908	11	11	0	0	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	c0005	1908	5	0	1	0	1	3	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	c0006	1908	5	4	1	0	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	c0007	1908	5	5	0	0	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	c0008	1908	5	0	2	0	0	3	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	c0009	1908	2	0	2	0	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	c0010	1908	2	0	0	0	2	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	c0011	1908	1	0	0	0	1	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	c0012	1908	1	0	0	1	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	c0013	1908	1	1	0	0	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	c0014	1908	1	0	0	1	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	c0015	1908	1	0	0	1	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	c0016	1908	1	1	0	0	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	1/0	c0017	1908	1	0	0	0	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A7_chr2_107981524_108018994	1/1	c0001	1743	318	91	60	112	10	43	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	c0002	1743	47	0	13	29	4	1	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	c0003	1743	4	4	0	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	c0004	1743	1	0	0	1	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	c0005	1743	1	0	0	1	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	c0006	1743	1	0	0	1	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	c0007	1743	1	0	0	1	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	c0008	1743	1	0	0	1	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	c0009	1743	1	1	0	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	c0010	1743	1	0	1	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A8_chr12_101150493_101215238	0/1	c0001	1833	170	61	31	56	5	16	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0002	1833	93	7	23	43	8	12	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0003	1833	73	5	6	59	1	2	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0004	1833	12	3	3	0	2	4	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0005	1833	3	3	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0006	1833	3	2	0	0	0	1	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0007	1833	2	2	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0008	1833	2	2	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0009	1833	2	0	0	2	0	0	copy fasta	SLC5A8	chr12	101150493	101215238