JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP6V1B1_chr2_70930900_70970431	0/0	c0003	1542	41	3	9	24	0	5	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0004	1542	34	7	13	12	0	2	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0005	1542	33	9	9	8	2	5	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/1	c0006	1542	28	9	2	11	2	3	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0007	1542	28	5	2	20	0	1	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0008	1542	24	1	1	20	0	2	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0009	1542	23	0	6	14	2	1	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0010	1542	17	4	1	10	0	2	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0011	1542	9	4	2	3	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0012	1542	7	6	1	0	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0013	1542	5	5	0	0	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0014	1542	4	0	0	0	0	4	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0015	1542	4	0	0	4	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0016	1542	4	1	0	3	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0017	1542	3	3	0	0	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0018	1542	2	0	0	1	0	1	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0019	1542	2	0	0	2	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0020	1542	2	0	0	2	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0021	1542	2	0	0	2	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0022	1542	2	2	0	0	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0023	1542	2	0	0	2	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0024	1542	1	1	0	0	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0025	1542	1	0	0	1	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0026	1542	1	0	0	0	0	1	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0027	1542	1	0	0	1	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0028	1542	1	1	0	0	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0029	1542	1	1	0	0	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0030	1542	1	0	0	0	0	1	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0031	1542	1	0	0	1	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0032	1542	1	0	0	0	0	1	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0033	1542	1	0	0	1	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0034	1542	1	1	0	0	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0035	1542	1	1	0	0	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	c0036	1542	1	0	0	1	0	0	copy fasta	ATP6V1B1	chr2	70930900	70970431
ATP6V1B2_chr8_20192381_20226696	1/1	c0001	1536	396	93	67	173	17	44	copy fasta	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	c0002	1536	2	0	1	0	1	0	copy fasta	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	c0003	1536	2	2	0	0	0	0	copy fasta	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	c0004	1536	1	0	0	1	0	0	copy fasta	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	c0005	1536	1	1	0	0	0	0	copy fasta	ATP6V1B2	chr8	20192381	20226696
ATP6V1C1_chr8_103016083_103078051	1/1	c0001	1149	383	67	58	196	18	42	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	c0002	1149	24	20	4	0	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	c0003	1149	1	1	0	0	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	c0004	1149	1	0	0	1	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	c0005	1149	1	1	0	0	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	c0006	1149	1	1	0	0	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	c0007	1149	1	0	0	1	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C2_chr2_10716630_10790110	0/0	c0001	1284	170	27	27	93	5	18	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	1/1	c0002	1284	124	42	29	40	2	9	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0003	1284	25	8	7	4	2	4	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0004	1284	12	2	1	0	1	8	copy fasta	ATP6V1C2	chr2	10716630	10790110