JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC5A8_chr12_101150493_101215238	0/0	c0010	1833	2	0	1	0	0	1	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0011	1833	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0012	1833	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0013	1833	1	0	0	0	0	1	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0014	1833	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0015	1833	1	0	0	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0016	1833	1	0	0	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0017	1833	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0018	1833	1	0	0	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0019	1833	1	0	0	0	0	1	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0020	1833	1	0	0	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0021	1833	1	0	0	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0022	1833	1	0	0	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	c0023	1833	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A9_chr1_48217716_48253638	0/1	c0001	2046	280	62	48	137	5	27	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0002	2046	38	1	2	34	0	1	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0003	2046	31	12	3	4	5	7	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0004	2046	10	10	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0005	2046	10	1	8	0	1	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0006	2046	9	0	0	4	0	5	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0007	2046	9	1	4	0	2	2	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0008	2046	6	0	5	0	0	1	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0009	2046	4	4	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0010	2046	3	3	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0011	2046	3	0	3	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0012	2046	3	0	2	1	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0013	2046	3	0	2	0	0	1	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0014	2046	2	0	0	2	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0015	2046	1	0	0	1	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0016	2046	1	1	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0017	2046	1	0	0	0	1	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0018	2046	1	1	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0019	2046	1	0	1	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	1/0	c0020	2046	1	0	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0021	2046	1	0	0	1	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0022	2046	1	1	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	c0023	2046	1	1	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC66A1_chr1_19307326_19334300	1/1	c0001	876	365	65	68	196	7	27	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	c0002	876	49	7	13	11	5	13	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	c0003	876	12	0	4	1	2	5	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	c0004	876	8	7	1	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	c0005	876	5	5	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	c0006	876	5	5	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	c0007	876	2	2	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	c0008	876	2	2	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	c0009	876	2	0	0	2	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	c0010	876	1	1	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	c0011	876	1	0	0	0	0	1	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	c0012	876	1	0	0	1	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	c0013	876	1	0	0	0	0	1	copy fasta	SLC66A1	chr1	19307326	19334300