JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC66A1_chr1_19307326_19334300	0/0	c0014	876	1	0	0	0	0	1	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	c0015	876	1	0	0	1	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A2_chr18_79897420_79956653	1/1	c0001	816	347	85	59	143	12	46	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	c0002	816	1	0	0	1	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	c0003	816	1	1	0	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	c0004	816	1	0	1	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	c0005	816	1	0	1	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	c0006	816	1	0	1	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A3_chr2_11150467_11183856	1/1	c0001	609	394	93	84	158	14	43	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	c0002	609	7	0	0	7	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	c0003	609	1	1	0	0	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	c0004	609	1	0	0	1	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	c0005	609	1	0	0	0	0	1	copy fasta	SLC66A3	chr2	11150467	11183856
SLC6A11_chr3_10811228_10945714	1/1	c0001	1899	110	16	23	54	5	10	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0002	1899	63	28	19	9	3	4	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0003	1899	60	15	6	22	4	13	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0004	1899	22	0	0	20	0	2	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0005	1899	12	5	3	4	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0006	1899	11	3	4	2	0	2	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0007	1899	11	0	1	8	0	2	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0008	1899	9	0	0	8	0	1	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0009	1899	9	3	0	5	0	1	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0010	1899	9	1	0	8	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0011	1899	8	0	0	8	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0012	1899	6	0	1	4	0	1	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0013	1899	6	1	2	3	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0014	1899	4	4	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0015	1899	3	0	0	3	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0016	1899	2	2	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0017	1899	2	2	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0018	1899	2	0	0	2	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0019	1899	1	1	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0020	1899	1	1	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0021	1899	1	1	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0022	1899	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0023	1899	1	1	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0024	1899	1	1	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0025	1899	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0026	1899	1	0	1	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0027	1899	1	1	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0028	1899	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0029	1899	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0030	1899	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	c0031	1899	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A12_chr12_185081_219157	0/0	c0001	1845	163	20	28	88	6	21	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/1	c0002	1845	99	15	28	31	8	16	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0003	1845	54	16	7	21	2	8	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	1/0	c0004	1845	51	0	11	36	0	3	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0005	1845	18	15	3	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0006	1845	7	7	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157