JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC6A12_chr12_185081_219157	0/0	c0007	1845	2	2	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0008	1845	2	2	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0009	1845	2	2	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0010	1845	2	2	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0011	1845	2	0	0	2	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0012	1845	2	2	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0013	1845	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0014	1845	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0015	1845	1	0	1	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0016	1845	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0017	1845	1	0	0	1	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0018	1845	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0019	1845	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0020	1845	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0021	1845	1	0	0	1	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0022	1845	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0023	1865	1	0	1	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0024	1845	1	0	1	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0025	1845	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0026	1845	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0027	1845	1	0	0	1	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	c0028	1845	1	0	0	1	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A13_chr12_215622_267836	1/0	c0001	1809	327	43	62	174	12	35	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/1	c0002	1809	63	20	9	21	2	10	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0003	1809	15	14	1	0	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0004	1809	7	6	0	0	0	1	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0005	1809	6	4	2	0	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0006	1809	4	0	4	0	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0007	1809	3	2	1	0	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0008	1809	3	3	0	0	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0009	1809	2	1	0	0	1	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0010	1533	1	1	0	0	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0011	1809	1	0	0	1	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0012	1809	1	0	0	0	1	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0013	1809	1	0	1	0	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0014	1809	1	0	0	1	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0015	1809	1	0	0	1	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0016	1809	1	1	0	0	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0017	1809	1	0	0	1	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0018	1809	1	0	0	1	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0019	1809	1	0	0	1	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0020	1809	1	1	0	0	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	c0021	1809	1	0	0	1	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A14_chrX_116431606_116466458	1/1	c0001	1929	275	63	40	134	10	26	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	c0002	1929	16	3	3	3	1	6	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	c0003	1929	5	2	3	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	c0004	1929	5	5	0	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	c0005	1929	3	0	0	3	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	c0006	1929	1	0	0	1	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	c0007	1932	1	0	0	1	0	0	copy fasta	SLC6A14	chrX	116431606	116466458