JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC6A14_chrX_116431606_116466458	0/0	c0008	1929	1	0	0	1	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	c0009	1929	1	1	0	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A15_chr12_84854491_84917799	1/1	c0001	2193	193	70	46	29	16	30	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	c0002	2193	13	12	1	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	c0003	2193	4	1	2	1	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	c0004	2193	3	0	0	3	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	c0005	2193	2	0	2	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	c0006	2193	1	0	0	1	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	c0007	2193	1	1	0	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	c0008	2193	1	0	1	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A16_chr19_49284638_49330191	1/1	c0001	2211	300	52	53	154	4	35	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A16_chr19_49284638_49330191	0/0	c0002	2211	19	18	1	0	0	0	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A16_chr19_49284638_49330191	0/0	c0003	2211	8	4	4	0	0	0	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A16_chr19_49284638_49330191	0/0	c0004	2211	5	5	0	0	0	0	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A16_chr19_49284638_49330191	0/0	c0005	2211	1	0	0	0	0	1	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A16_chr19_49284638_49330191	0/0	c0006	2211	1	1	0	0	0	0	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A16_chr19_49284638_49330191	0/0	c0007	2211	1	1	0	0	0	0	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A16_chr19_49284638_49330191	0/0	c0008	2211	1	1	0	0	0	0	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A16_chr19_49284638_49330191	0/0	c0009	2211	1	1	0	0	0	0	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A16_chr19_49284638_49330191	0/0	c0010	2211	1	1	0	0	0	0	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A17_chr1_110145494_110207202	1/1	c0001	2184	111	11	25	58	4	11	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0002	2184	53	1	10	28	5	9	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0003	2184	44	0	14	20	4	6	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0004	2184	36	30	0	6	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0005	2184	28	2	11	9	3	3	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0006	2184	24	22	2	0	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0007	2184	11	10	1	0	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0008	2184	9	3	5	0	0	1	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0009	2184	2	2	0	0	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0010	2184	2	0	0	0	2	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0011	2184	1	0	0	1	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0012	2196	1	0	0	1	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0013	2184	1	0	0	1	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0014	2184	1	1	0	0	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0015	2184	1	1	0	0	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0016	2184	1	0	0	0	0	1	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0017	2184	1	1	0	0	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	c0018	2184	1	0	0	0	0	1	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A18_chr5_1220381_1251189	0/1	c0001	1887	86	2	14	63	2	4	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0002	1887	86	20	26	25	5	10	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	1/0	c0003	1887	55	0	4	45	1	4	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0004	1887	52	30	11	2	1	8	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0005	1887	22	0	0	17	0	5	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0006	1887	22	3	3	9	6	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0007	1887	17	0	7	9	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0008	1887	11	1	1	8	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0009	1887	10	3	3	0	1	3	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0010	1887	8	2	0	0	0	6	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0011	1887	8	0	6	1	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0012	1887	7	6	1	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189