JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC6A18_chr5_1220381_1251189	0/0	c0013	1887	6	6	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0014	1887	6	0	0	6	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0015	1887	5	0	0	5	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0016	1887	4	0	0	4	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0017	1887	4	0	2	1	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0018	1887	4	0	2	2	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0019	1887	3	3	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0020	1887	3	3	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0021	1887	3	0	2	0	1	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0022	1887	3	0	2	1	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0023	1887	2	2	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0024	1887	2	0	2	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0025	1887	2	0	1	0	1	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0026	1887	1	0	0	0	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0027	1887	1	0	1	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0028	1887	1	0	0	0	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0029	1887	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0030	1887	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0031	1887	1	0	0	0	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0032	1887	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0033	1887	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0034	1887	1	0	0	0	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0035	1887	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0036	1887	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0037	1887	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0038	1869	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0039	1887	1	0	0	0	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0040	1887	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0041	1887	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0042	1887	1	0	0	1	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0043	1887	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0044	1887	1	0	0	1	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0045	1887	1	0	0	1	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0046	1887	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0047	1887	1	0	0	1	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0048	1887	1	0	0	1	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0049	1887	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	c0050	1887	1	0	0	1	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A19_chr5_1196595_1230111	0/0	c0001	1905	177	29	40	78	5	25	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/1	c0002	1905	94	14	24	43	3	9	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0003	1905	64	24	4	28	2	6	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	1/0	c0004	1905	58	6	8	36	2	5	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0005	1905	11	5	3	3	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0006	1905	10	0	1	8	0	1	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0007	1905	4	0	0	3	0	1	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0008	1905	4	0	0	4	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0009	1905	3	2	1	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0010	1905	2	2	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0011	1905	2	0	0	2	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0012	1905	2	0	0	2	0	0	copy fasta	SLC6A19	chr5	1196595	1230111