JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC6A19_chr5_1196595_1230111	0/0	c0013	1905	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0014	1905	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0015	1905	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0016	1905	1	0	1	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0017	1905	1	0	0	0	1	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0018	1905	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0019	1905	1	0	0	0	1	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0020	1905	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0021	1905	1	0	0	0	0	1	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0022	1905	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0023	1905	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0024	1905	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0025	1905	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0026	1905	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0027	1905	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0028	1905	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0029	1905	1	0	1	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0030	1905	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0031	1905	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0032	1905	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0033	1905	1	0	1	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0034	1905	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0035	1905	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0036	1905	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0037	1905	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0038	1905	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	c0039	1905	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A1_chr3_10987748_11044247	1/1	c0001	1800	377	86	55	187	10	37	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0002	1800	28	2	4	13	2	7	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0003	1800	6	0	0	5	0	1	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0004	1800	5	5	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0005	1800	4	0	3	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0006	1800	4	0	0	4	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0007	1800	3	2	1	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0008	1800	2	0	2	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0009	1800	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0010	1800	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0011	1800	1	0	0	0	0	1	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0012	1800	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0013	1800	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0014	1800	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0015	1800	1	0	1	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0016	1800	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	c0017	1800	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A20_chr3_45750449_45801536	0/0	c0001	1779	281	57	60	121	12	31	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0002	1779	31	1	6	18	3	3	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	1/0	c0003	1779	20	0	2	15	0	2	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0004	1779	18	13	0	0	0	5	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0005	1779	9	9	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0006	1779	9	7	2	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536