JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC6A20_chr3_45750449_45801536	0/0	c0007	1779	8	0	0	8	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/1	c0008	1779	6	0	3	1	1	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0009	1779	2	0	0	2	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0010	1779	2	0	1	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0011	1779	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0012	1779	1	1	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0013	1779	1	0	0	0	0	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0014	1779	1	1	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0015	1779	1	0	0	0	0	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0016	1779	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0017	1779	1	0	1	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0018	1779	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0019	1779	1	1	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0020	1779	1	0	1	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0021	1779	1	0	0	0	0	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	c0022	1779	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A2_chr16_55650988_55711192	1/1	c0001	1854	293	69	51	130	8	33	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	c0002	1854	89	12	20	42	6	9	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	c0003	1854	3	0	2	0	0	1	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	c0004	1854	2	2	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	c0005	1854	2	0	0	1	0	1	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	c0006	1854	2	0	0	2	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	c0007	1854	2	2	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	c0008	1854	1	0	0	1	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	c0009	1854	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	c0010	1854	1	0	1	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	c0011	1854	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	c0012	1854	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A3_chr5_1387794_1450440	0/1	c0001	1863	235	21	54	117	10	32	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0002	1863	52	7	11	22	3	9	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0003	1863	20	20	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0004	1863	10	1	4	1	2	2	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0005	1863	8	6	2	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0006	1863	7	7	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0007	1863	7	7	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0008	1863	6	4	0	0	1	1	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0009	1863	5	5	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0010	1863	4	4	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0011	1863	4	4	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0012	1863	4	1	1	0	0	2	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0013	1863	3	1	0	2	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0014	1863	2	2	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0015	1863	1	0	0	1	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0016	1863	1	0	0	1	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0017	1863	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0018	1863	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0019	1863	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	c0020	1863	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A4_chr17_30189319_30240697	1/1	c0001	1893	260	78	60	66	13	41	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	c0002	1893	8	0	0	8	0	0	copy fasta	SLC6A4	chr17	30189319	30240697