JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC6A4_chr17_30189319_30240697	0/0	c0003	1893	5	5	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	c0004	1893	4	4	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	c0005	1893	2	2	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	c0006	1893	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	c0007	1893	1	0	0	0	1	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	c0008	1893	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	c0009	1893	1	0	0	0	0	1	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	c0010	1893	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	c0011	1893	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	c0012	1893	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A5_chr11_20594608_20664285	0/0	c0001	2394	80	2	18	47	3	10	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0002	2394	49	26	7	0	5	11	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0003	2394	44	0	7	37	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0004	2394	41	26	6	2	3	4	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/1	c0005	2394	24	1	6	11	1	4	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0006	2394	16	1	5	9	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0007	2394	11	1	3	7	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0008	2394	10	1	4	0	0	5	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0009	2394	8	0	0	7	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0010	2394	6	1	2	1	0	2	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0011	2394	6	6	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0012	2394	5	1	4	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0013	2394	5	2	3	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0014	2394	5	0	4	0	1	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0015	2394	4	3	1	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0016	2394	3	3	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0017	2394	3	3	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0018	2394	3	0	0	2	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0019	2394	3	3	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0020	2394	2	2	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0021	2394	2	0	1	0	1	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0022	2394	2	0	0	0	2	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0023	2394	2	2	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0024	2394	2	2	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0025	2394	2	2	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0026	2394	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0027	2394	1	0	0	0	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0028	2394	1	0	0	0	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0029	2394	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0030	2394	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0031	2394	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0032	2394	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0033	2394	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	1/0	c0034	2394	1	0	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0035	2394	1	0	1	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0036	2394	1	0	0	1	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0037	2394	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0038	2394	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0039	2394	1	0	0	0	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	c0040	2394	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285