JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC6A5_chr11_20594608_20664285	0/0	c0041	2394	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A6_chr3_14397606_14494349	1/1	c0001	1863	354	85	67	141	14	45	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	c0002	1863	7	7	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	c0003	1863	6	0	6	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	c0004	1863	5	5	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	c0005	1863	1	0	0	0	0	1	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	c0006	1863	1	0	0	1	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	c0007	1863	1	0	1	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	c0008	1863	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A7_chr5_150185062_150216063	0/1	c0001	1911	244	47	56	96	12	32	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0002	1911	111	12	22	65	4	8	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0003	1911	78	23	2	48	2	3	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0004	1911	7	0	0	5	0	2	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0005	1911	5	5	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0006	1911	4	0	0	4	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0007	1911	4	4	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0008	1911	3	3	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0009	1911	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0010	1911	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0011	1911	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0012	1911	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0013	1911	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0014	1911	1	0	0	0	0	1	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0015	1911	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	1/0	c0016	1911	1	0	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0017	1911	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0018	1911	1	0	0	0	0	1	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0019	1911	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	c0020	1911	1	0	0	0	0	1	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A8_chrX_153682926_153701588	1/1	c0001	1908	281	73	53	109	10	34	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	c0002	1908	2	2	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	c0003	1909	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	c0004	1907	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	c0005	1909	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	c0006	1907	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	c0007	1908	1	0	1	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	c0008	1908	1	1	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	c0009	1908	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A9_chr1_43991483_44036462	1/1	c0001	1902	267	50	58	122	6	29	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	c0002	1902	98	34	7	46	4	7	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	c0003	1902	6	5	0	0	0	1	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	c0004	1902	5	4	1	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	c0005	1902	2	0	0	2	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	c0006	1902	2	1	1	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	c0007	1902	1	0	0	1	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	c0008	1902	1	1	0	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	c0009	1902	1	0	0	1	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	c0010	1902	1	0	1	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	c0011	1902	1	0	0	1	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	c0012	1902	1	1	0	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462