Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABHD17C_chr15_80690310_80760621	0/0	c0005	990	1	1	0	0	0	0	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD18_chr4_127960406_128044953	1/1	c0001	1395	265	79	43	99	12	30	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	c0002	1395	65	0	7	58	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	c0003	1395	6	6	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	c0004	1395	3	0	0	3	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	c0005	1395	2	2	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	c0006	1395	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	c0007	1395	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	c0008	1395	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD1_chr2_27118815_27135812	1/1	c0001	1218	290	51	56	136	16	29	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	c0002	1218	91	30	15	37	2	7	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	c0003	1218	5	5	0	0	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	c0004	1218	4	4	0	0	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	c0005	1218	2	2	0	0	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	c0006	1218	1	0	0	1	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	c0007	1218	1	0	0	1	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	c0008	1218	1	0	1	0	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	c0009	1218	1	0	1	0	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	c0010	1218	1	0	0	1	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	c0011	1218	1	0	1	0	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	c0012	1218	1	0	0	1	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	c0013	1218	1	0	0	1	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD2_chr15_89083456_89207355	1/1	c0001	1278	217	77	36	64	8	30	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	c0002	1278	7	6	1	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	c0003	1278	3	3	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	c0004	1278	2	2	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	c0005	1278	1	0	0	1	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	c0006	1278	1	0	0	1	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	c0007	1278	1	1	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	c0008	1278	1	0	1	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	c0009	1278	1	1	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD3_chr18_21645901_21709774	1/1	c0001	1230	288	73	53	114	10	36	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	c0002	1230	6	6	0	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	c0003	1230	5	4	1	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	c0004	1230	1	0	1	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	c0005	1230	1	0	0	1	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	c0006	1230	1	0	0	1	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	c0007	1230	1	1	0	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	c0008	1230	1	0	1	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD4_chr14_22593300_22617963	1/1	c0001	1029	373	58	68	184	16	45	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	c0002	1029	47	35	6	0	2	4	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	c0003	1029	1	0	0	0	0	1	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	c0004	1029	1	1	0	0	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	c0005	1029	1	1	0	0	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	c0006	1029	1	1	0	0	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD5_chr3_43685938_43727725	1/1	c0001	1050	260	74	45	105	6	28	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	c0002	1050	14	3	4	4	0	3	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	c0003	1050	3	2	1	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	c0004	1050	2	2	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	c0005	1050	1	1	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725