JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP6V1C2_chr2_10716630_10790110	0/0	c0005	1284	4	4	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0006	1284	3	0	1	0	0	2	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0007	1284	3	0	3	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0008	1284	2	0	2	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0009	1284	2	1	1	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0010	1284	1	1	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0011	1284	1	0	1	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0012	1284	1	1	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0013	1284	1	0	0	0	0	1	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0014	1284	1	0	0	1	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0015	1284	1	1	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0016	1284	1	1	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0017	1284	1	1	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	c0018	1284	1	1	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1D_chr14_67332872_67364804	1/1	c0001	744	337	88	72	139	8	28	copy fasta	ATP6V1D	chr14	67332872	67364804
ATP6V1D_chr14_67332872_67364804	0/0	c0002	744	9	0	0	9	0	0	copy fasta	ATP6V1D	chr14	67332872	67364804
ATP6V1D_chr14_67332872_67364804	0/0	c0003	744	2	0	0	2	0	0	copy fasta	ATP6V1D	chr14	67332872	67364804
ATP6V1E1_chr22_17587136_17633749	1/1	c0001	681	345	82	67	142	14	38	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	c0002	681	12	11	1	0	0	0	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	c0003	681	5	0	0	4	0	1	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	c0004	681	3	0	0	3	0	0	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	c0005	681	2	1	0	0	0	1	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	c0006	681	1	1	0	0	0	0	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	c0007	681	1	1	0	0	0	0	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	c0008	681	1	0	0	1	0	0	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E2_chr2_46506847_46547577	1/1	c0001	681	391	78	76	175	16	44	copy fasta	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	c0002	681	10	8	2	0	0	0	copy fasta	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	c0003	681	2	0	0	2	0	0	copy fasta	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	c0004	681	2	2	0	0	0	0	copy fasta	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	c0005	681	1	0	0	1	0	0	copy fasta	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	c0006	681	1	1	0	0	0	0	copy fasta	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	c0007	681	1	0	0	1	0	0	copy fasta	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	c0008	681	1	1	0	0	0	0	copy fasta	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	c0009	681	1	0	0	1	0	0	copy fasta	ATP6V1E2	chr2	46506847	46547577
ATP6V1FNB_chr7_128861330_128877047	1/1	c0001	531	424	91	73	196	15	47	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	c0002	531	4	0	0	4	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	c0003	531	2	0	0	2	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	c0004	531	2	2	0	0	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	c0005	531	2	0	0	0	1	1	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	c0006	531	1	0	0	1	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	c0007	531	1	0	0	1	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	c0008	531	1	0	0	0	0	1	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	c0009	531	1	1	0	0	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	c0010	531	1	0	0	1	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	c0011	531	1	0	0	0	0	1	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	c0012	531	1	0	0	1	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	c0013	531	1	0	1	0	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1F_chr7_128857856_128870847	1/1	c0001	360	423	93	77	186	18	47	copy fasta	ATP6V1F	chr7	128857856	128870847
ATP6V1F_chr7_128857856_128870847	0/0	c0002	360	15	0	0	12	0	3	copy fasta	ATP6V1F	chr7	128857856	128870847
ATP6V1F_chr7_128857856_128870847	0/0	c0003	360	3	3	0	0	0	0	copy fasta	ATP6V1F	chr7	128857856	128870847